View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_59 (Length: 285)
Name: NF1783_high_59
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_59 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 38719548 - 38719816
Alignment:
| Q |
1 |
atggtctaagaggcattcattcatcaccacaaactaaagaaaaggcaagacaaattcaacgacagaaaatataacaaacaaaagcaacaacgtttggtag |
100 |
Q |
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| T |
38719548 |
atggtctaagaggcattcattcattaccacaaactaaagaaaagacaagacaaattcaacgacagaaaatataacaaacaaaagcaacaacgtttggtag |
38719647 |
T |
|
| Q |
101 |
ccccgaaactaacattctaaaaaacaaaggtggctaagaccaaagcaaccccaacaccaacagagcctctaaatctatgagaacccgaatgagcaggaga |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| |
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| T |
38719648 |
ccccgaaactaacattctaaaaaacaaaggaggctaagaccaaagcaaccccaacaccaacagagcctctaaacctatcagatcccgaatgagcaggaga |
38719747 |
T |
|
| Q |
201 |
tggcgcaggagaattctcgccgatgggtgatgtcgtcggagcagtcttgccagcagcacttggtgaagg |
269 |
Q |
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| T |
38719748 |
tggtgcaggagaattctcgtcgataggagatgtagtcggaggagtatcaccagtagcacttggtgaagg |
38719816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 52798887 - 52798831
Alignment:
| Q |
106 |
aaactaacattctaaaaaacaaaggtggctaagaccaaagcaaccccaacaccaaca |
162 |
Q |
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|||| ||||||||||||| ||||||| ||||||||||||| ||| |||||| |||| |
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| T |
52798887 |
aaacgaacattctaaaaagcaaaggttcctaagaccaaagccaccacaacactaaca |
52798831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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