View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_90 (Length: 237)
Name: NF1783_high_90
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_90 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 40259076 - 40259294
Alignment:
| Q |
1 |
taaggatcatttgacatttcatttgttatctcacattacatcacatcaactagaattctatttttaataatgataaactaaaccaaccttccaagttaag |
100 |
Q |
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| T |
40259076 |
taaggatcagttgacatttcatttgttatctcacattacatcacatcaactagaattctattttttataatgataa-ctaaaccaaccttccaagttaag |
40259174 |
T |
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| Q |
101 |
acggtttgcatttttcctaagaaatttcatagactgacttttatgataatccacacacaatctgccaaatatgacatcatggagtgagagaatgagtcac |
200 |
Q |
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| T |
40259175 |
acggtttgcatttttcctaagaaatttcatagactgacttttatgataatccacacacaatctgccaaatatgacatcatggagtgagggaatgagtcac |
40259274 |
T |
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| Q |
201 |
gcagttaacatatcagaagt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
40259275 |
gcagttaacatatcagaagt |
40259294 |
T |
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