View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_10 (Length: 579)
Name: NF1783_low_10
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 101 - 561
Target Start/End: Complemental strand, 39983258 - 39982803
Alignment:
| Q |
101 |
ttggacatatcaattttttggaaattaatatgttccaacaatttggccacttaaaaaatccaaaatttaaaattattccggtagattcttctattccatt |
200 |
Q |
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| T |
39983258 |
ttggacatatcaatttttgggaaattaatatgttccaacaatttggccacttaaaaaatccaaaatataaaattattccggtagattcttctattccatt |
39983159 |
T |
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| Q |
201 |
ctaggttataatgccggtagcaaagttgagtggttttctttttggagctagataataagtgattttcttctcaccccatgctttcaaaatttcaaaacta |
300 |
Q |
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| T |
39983158 |
ctaggttataatgccggtagcaaagttgagtagttttctttttggagctagataataagtgattttcttctcaccccatgctttcaaaatttcaaaacta |
39983059 |
T |
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| Q |
301 |
ctcatgcttggattttgtaatctaaataaacggtatttgtttggattgtagtatctagacatatggaatttcttcattttgaaatcatattaaagtaggc |
400 |
Q |
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| T |
39983058 |
ctcatgcttggattttgtaatctaaataaacggtatttgtttggattgtagtatctagacgtatggaatttcttccttttgaaatcatattaaaataggc |
39982959 |
T |
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| Q |
401 |
attcagataacatgattcatatatatcaaataacatcatgattcatactagcaag-nnnnnnnnnntcaaatttaaatacaaatattagacatataaatt |
499 |
Q |
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| T |
39982958 |
attcagataacatgattc----atatcaaataacatcatgattcatactagcaagaaaaaaaaaaatcaaatttaaatacaaatattagac--ataaatt |
39982865 |
T |
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| Q |
500 |
taacactaaaggttcatgaatgagccaagctagtaaaactcttgcaagatgacatgctttct |
561 |
Q |
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| T |
39982864 |
taacactaaaggttcatgaatgagccaagctagtaaaactcttgcaagatgacatgctttct |
39982803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 40416147 - 40416204
Alignment:
| Q |
502 |
acactaaaggttcatgaatgagccaagctagtaaaactcttgcaagatgacatgcttt |
559 |
Q |
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| T |
40416147 |
acactaaaagttcatgaatgagctaagctggtaaaactcttgcaagatgacatgcttt |
40416204 |
T |
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