View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_106 (Length: 227)
Name: NF1783_low_106
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_106 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 6969609 - 6969761
Alignment:
| Q |
75 |
cagaaatcgattttgcacttttattcttatagctgaaaacaaaaagagagggtagctaggtagatagattcactttaaatttgtatatatgtatacatta |
174 |
Q |
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| T |
6969609 |
cagaaatcgattttgcacttttattcttatagctgaaaacaaaaagagagggtagctaggtagatagattcactttaaatttgtatatatgtatacatta |
6969708 |
T |
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| Q |
175 |
gttcattcctcgggattgatgtaccctttatcttttgtattaatagatatttt |
227 |
Q |
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| T |
6969709 |
gttcattcctcgggattgatgtaccctttatcttttgtattaatagatatttt |
6969761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 6969541 - 6969581
Alignment:
| Q |
7 |
attccatttctcaatcacattcccttctttttctaaagtag |
47 |
Q |
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| T |
6969541 |
attccatttctcaatcacattcccttctttttctaaagtag |
6969581 |
T |
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