View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_112 (Length: 217)
Name: NF1783_low_112
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 3440063 - 3439880
Alignment:
| Q |
15 |
atgaatagaagcacaaataccaaaaactgagaaatcttgaagaaaatttacacttctagttctacatgatttttatacaatcccctgcaacaccaaattt |
114 |
Q |
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| T |
3440063 |
atgaatagaagcacaaataccaaaaactgagaaatcttgaagaaaatttacacttctagctctacatgatttttatacaatcccctgcaacaccaaattt |
3439964 |
T |
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| Q |
115 |
tacaattcattaggttctaatgaaattagaaggaaaacacaaatcggttccacataaaaaatggaactactacagcctagctag |
198 |
Q |
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| T |
3439963 |
tacaattcattaggttctaatgaaattagaaggaaaacacaaatcggttccacataaaaaatggaactactacagcctagctag |
3439880 |
T |
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