View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_113 (Length: 215)

Name: NF1783_low_113
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_113
NF1783_low_113
[»] chr7 (3 HSPs)
chr7 (147-207)||(21867711-21867771)
chr7 (73-148)||(22815645-22815718)
chr7 (1-42)||(22840597-22840638)
[»] chr5 (2 HSPs)
chr5 (147-207)||(7955666-7955726)
chr5 (147-207)||(1593063-1593123)
[»] chr4 (3 HSPs)
chr4 (147-207)||(30200248-30200308)
chr4 (148-207)||(27365975-27366034)
chr4 (147-207)||(45112682-45112742)
[»] chr8 (5 HSPs)
chr8 (148-207)||(20267156-20267215)
chr8 (148-207)||(21053785-21053844)
chr8 (147-207)||(18630408-18630468)
chr8 (147-207)||(15362979-15363039)
chr8 (147-207)||(18166854-18166914)
[»] chr3 (2 HSPs)
chr3 (147-207)||(20320977-20321037)
chr3 (147-207)||(34151722-34151782)
[»] chr1 (3 HSPs)
chr1 (148-207)||(34917671-34917730)
chr1 (147-207)||(34025316-34025376)
chr1 (89-149)||(21150046-21150101)
[»] chr2 (2 HSPs)
chr2 (147-207)||(603987-604047)
chr2 (147-207)||(12336298-12336358)


Alignment Details
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 21867771 - 21867711
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  21867771 tgaaacagggtactcttgttatgtattaaaaaacaagtatataccctgaccaatacctttg 21867711  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 22815645 - 22815718
Alignment:
Q  73 atttgggtcctacgtactaagaaatgtcctggaatctagctatgaattactttattactaaaagaaacatcacatg 148  Q
    |||||||||||| |||||||||||||||||||||  |||||| ||||||  |||||||||||||||||||||||||    
T  22815645 atttgggtcctaggtactaagaaatgtcctggaacttagctaggaatta--ttattactaaaagaaacatcacatg 22815718  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22840597 - 22840638
Alignment:
Q  1 atgatgcttctgttgtgctgttcggtgtttattatttataag 42  Q
    ||||||||||||| || ||||| |||||||||||||||||||    
T  22840597 atgatgcttctgtagttctgtttggtgtttattatttataag 22840638  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 7955666 - 7955726
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  7955666 tgaaacagggtactcttgttatgtattaaaaaacaagtatataccctgaccaatacctttg 7955726  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 1593063 - 1593123
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||    
T  1593063 tgaaacagggtactcttgttatgtattaaaaaacaagtatataccatgaccaatacctttg 1593123  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 30200308 - 30200248
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  30200308 tgaaacagggtactcttgttatgtattaaaaaacaagtatataccctgaccaatacctttg 30200248  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 27366034 - 27365975
Alignment:
Q  148 gaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  27366034 gaaacagggtactcttgttatgtattaaaaaacaagtatatatcatgaccaatacctttg 27365975  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 45112742 - 45112682
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  45112742 tgaaacagggtactcttgttatgtattaaaaaaaaagtatataccctgaccaatacctttg 45112682  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 20267156 - 20267215
Alignment:
Q  148 gaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20267156 gaaacaaggtactcttgttatgtattaaaaaacaagtatatatcctgaccaatacctttg 20267215  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 21053785 - 21053844
Alignment:
Q  148 gaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21053785 gaaacaaggtactcttgttatgtattaaaaaacaagtatatatcctgaccaatacctttg 21053844  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 18630408 - 18630468
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  18630408 tgaaacagagtactcttgttatgtattaaaaaacaagtatataccctgaccaatacctttg 18630468  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 15362979 - 15363039
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    ||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  15362979 tgaaacatggtactcttgttatgtattaaaaaacaagtatatacgctgaccaatacctttg 15363039  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 18166854 - 18166914
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  18166854 tgaaacagagtactcttgttatgtattaaaaaacaagtatatactctgaccaatacctttg 18166914  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 20320977 - 20321037
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  20320977 tgaaacagggtactcttgttatgtattaaaaaataagtatataccctgaccaatacctttg 20321037  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 34151722 - 34151782
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  34151722 tgaaacagggtactcttgttatgtattaaaaaataagtatataccctgaccaatacctttg 34151782  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 34917671 - 34917730
Alignment:
Q  148 gaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  34917671 gaaacagggtactcttgttatgtattaaaaaacaagtatatatcatgatcaatacctttg 34917730  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 34025316 - 34025376
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    |||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  34025316 tgaaacagagtactcttgttatgtattaaaaaacaagtatatactctgaccaatacctttg 34025376  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 21150101 - 21150046
Alignment:
Q  89 ctaagaaatgtcctggaatctagctatgaattactttattactaaaagaaacatcacatga 149  Q
    ||||||||||||| |||| ||||||| ||||||     |||||||||||||||||||||||    
T  21150101 ctaagaaatgtccgggaacctagctacgaatta-----ttactaaaagaaacatcacatga 21150046  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 604047 - 603987
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||    
T  604047 tgaaacagggtactcttattatgtattaaaaaacaaatatatatcctgactaatacctttg 603987  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 12336298 - 12336358
Alignment:
Q  147 tgaaacagggtactcttgttatatattaaaaaacaagtatatatcctgaccaatacctttg 207  Q
    ||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  12336298 tgaaacatggtactcttgttatgtattaaaaaacaagtatatacgctgaccaatacctttg 12336358  T

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