View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1783_low_115 (Length: 212)
Name: NF1783_low_115
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_115 |
 | |
|
| [»] scaffold1031 (1 HSPs) |
| | |
|
| [»] scaffold1037 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1031 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1031
Description:
Target: scaffold1031; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 2532 - 2426
Alignment:
| Q |
87 |
atgatctacatttatgtatttgaaaaatctcaatgnnnnnnnnncttcttttgttattttgt---gtaggttgcttggctatatttttgtgtgattaaca |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2532 |
atgatctacatttatgtatttgaaaaatctcaatgttttttt--cttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaaca |
2435 |
T |
|
| Q |
184 |
tgttgaact |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
2434 |
tgttgaact |
2426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 216932 - 217038
Alignment:
| Q |
87 |
atgatctacatttatgtatttgaaaaatctcaatgnnnnnnnnncttcttttgttattttgt---gtaggttgcttggctatatttttgtgtgattaaca |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
216932 |
atgatctacatttatgtatttgaaaaatctcaatgttttttt--cttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaaca |
217029 |
T |
|
| Q |
184 |
tgttgaact |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
217030 |
tgttgaact |
217038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 693492 - 693598
Alignment:
| Q |
87 |
atgatctacatttatgtatttgaaaaatctcaatgnnnnnnnnncttcttttgttattttgt---gtaggttgcttggctatatttttgtgtgattaaca |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
693492 |
atgatctacatttatgtatttgaaaaatctcaatgttttttt--cttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaaca |
693589 |
T |
|
| Q |
184 |
tgttgaact |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
693590 |
tgttgaact |
693598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 697701 - 697807
Alignment:
| Q |
87 |
atgatctacatttatgtatttgaaaaatctcaatgnnnnnnnnncttcttttgttattttgt---gtaggttgcttggctatatttttgtgtgattaaca |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
697701 |
atgatctacatttatgtatttgaaaaatctcaatgttttttt--cttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaaca |
697798 |
T |
|
| Q |
184 |
tgttgaact |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
697799 |
tgttgaact |
697807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 730555 - 730661
Alignment:
| Q |
87 |
atgatctacatttatgtatttgaaaaatctcaatgnnnnnnnnncttcttttgttattttgt---gtaggttgcttggctatatttttgtgtgattaaca |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
730555 |
atgatctacatttatgtatttgaaaaatctcaatgttttttt--cttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaaca |
730652 |
T |
|
| Q |
184 |
tgttgaact |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
730653 |
tgttgaact |
730661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 854450 - 854556
Alignment:
| Q |
87 |
atgatctacatttatgtatttgaaaaatctcaatgnnnnnnnnncttcttttgttattttgt---gtaggttgcttggctatatttttgtgtgattaaca |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
854450 |
atgatctacatttatgtatttgaaaaatctcaatgttttttt--cttcttttgttattatgtcgtgtaggttgcttggctatatttttgtgtgattaaca |
854547 |
T |
|
| Q |
184 |
tgttgaact |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
854548 |
tgttgaact |
854556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1037 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold1037
Description:
Target: scaffold1037; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 2413 - 2308
Alignment:
| Q |
87 |
atgatctacatttatgtatttgaaaaatctcaatgnnnnnnnnncttcttttgttattttgt---gtaggttgcttggctatatttttgtgtgattaaca |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2413 |
atgatctacatttatgtatttgaaaaatctcaat---attttttcttcttttgttattatgtcgtgtaggttgcttggctatatttttctgtgattaaca |
2317 |
T |
|
| Q |
184 |
tgttgaact |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
2316 |
tgttgaact |
2308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 43737918 - 43737873
Alignment:
| Q |
147 |
gtgtaggttgcttggctatatttttgtgtgattaacatgttgaact |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
43737918 |
gtgtaggttgcttggctatatttttgtgtgactaatatgttgaact |
43737873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 43737982 - 43737948
Alignment:
| Q |
87 |
atgatctacatttatgtatttgaaaaatctcaatg |
121 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
43737982 |
atgatcgacatttatgtatttgaaaaatctcaatg |
43737948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University