View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_12 (Length: 574)
Name: NF1783_low_12
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 162 - 559
Target Start/End: Original strand, 34475673 - 34476070
Alignment:
| Q |
162 |
tatttgtaaaacaattagatgcttaagcaaataggacatacaagtccaaaactgatagcaaatatgtggttagaaaattatatttccataaagnnnnnnn |
261 |
Q |
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| T |
34475673 |
tatttgtaaaacaattagatgcttaagcaaataggacatacaagtccaaaactgatagcaaatatgtggttagaaaattatatttccataaagaaaaaaa |
34475772 |
T |
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| Q |
262 |
ntattatagattcatctaattgaaaaaatattattttaatgatcactcattgaatgcatctactaaatcaacatatttacattgtattttcaattgaaaa |
361 |
Q |
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| T |
34475773 |
atattatagattcatctaattgaaaaaatattattttaatgatcactcattgaatgcatctactaaatcaacatatttacattgtattttcaattgaaaa |
34475872 |
T |
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| Q |
362 |
cgactttgaaaactacattgatgaacaaccgaacatattgccaagtctgtctctgttagccaacaaaagcactggcaaccatccccacaacttaatggga |
461 |
Q |
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| T |
34475873 |
cgactttgaaaactacattgatgaacaaccgaacatattgccaagtctgtctctgttagccaacaaaagcaccggcaactatccccacaacttaatggga |
34475972 |
T |
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| Q |
462 |
aatgttaaacttacttaccaaaagaaagaccgtataagcgtgtgaagaaacagaaatgtttcagggaaaataataaataaataatgacagaactgtat |
559 |
Q |
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| T |
34475973 |
aatgttaaacttacttaccaaaagaaagaccgtataagcgtgtgaagaaacagagatgtttcagggaaaataataaataaataatgacaggactgtat |
34476070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 34475523 - 34475599
Alignment:
| Q |
13 |
aaaattgagccgagcaaatattttaaacggtggaattgaatgaatgaaacaatgagtttaaatcataattatatgac |
89 |
Q |
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| T |
34475523 |
aaaattgagccgagcaaatattttaaacagtagaattgaatgaatgaaacgatgagtttaaatcataattatatgac |
34475599 |
T |
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