View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_14 (Length: 571)

Name: NF1783_low_14
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_14
NF1783_low_14
[»] chr5 (15 HSPs)
chr5 (1-388)||(4273431-4273818)
chr5 (463-552)||(4273184-4273273)
chr5 (393-461)||(4273303-4273371)
chr5 (393-455)||(11095427-11095489)
chr5 (261-330)||(20982251-20982321)
chr5 (407-455)||(10771820-10771868)
chr5 (261-296)||(23137366-23137401)
chr5 (262-362)||(11457008-11457111)
chr5 (261-330)||(26516182-26516252)
chr5 (265-298)||(36539158-36539191)
chr5 (261-310)||(37873971-37874020)
chr5 (261-289)||(1550812-1550840)
chr5 (261-289)||(7026411-7026439)
chr5 (392-467)||(11297115-11297191)
chr5 (264-296)||(32222901-32222933)
[»] chr4 (9 HSPs)
chr4 (5-120)||(41211158-41211273)
chr4 (129-211)||(41211373-41211455)
chr4 (261-310)||(33640992-33641042)
chr4 (261-329)||(46053584-46053653)
chr4 (406-469)||(2811560-2811624)
chr4 (261-289)||(6427918-6427946)
chr4 (261-297)||(8422987-8423023)
chr4 (262-290)||(40709537-40709565)
chr4 (267-310)||(55437420-55437464)
[»] chr6 (17 HSPs)
chr6 (128-211)||(10151245-10151328)
chr6 (261-310)||(4247220-4247270)
chr6 (299-376)||(10400192-10400273)
chr6 (261-296)||(7268050-7268085)
chr6 (394-448)||(2735147-2735201)
chr6 (262-296)||(4003751-4003785)
chr6 (342-384)||(29274287-29274329)
chr6 (261-295)||(31807978-31808012)
chr6 (318-375)||(1904762-1904818)
chr6 (318-375)||(1908995-1909051)
chr6 (261-329)||(3155060-3155129)
chr6 (261-290)||(14340960-14340989)
chr6 (261-383)||(2206474-2206601)
chr6 (264-296)||(8470124-8470156)
chr6 (392-440)||(10154287-10154335)
chr6 (342-386)||(22742336-22742380)
chr6 (261-289)||(34404322-34404350)
[»] chr7 (10 HSPs)
chr7 (392-436)||(36537983-36538027)
chr7 (261-376)||(49060424-49060544)
chr7 (342-381)||(23918927-23918966)
chr7 (342-389)||(48157173-48157220)
chr7 (393-442)||(6977492-6977541)
chr7 (261-289)||(657842-657870)
chr7 (342-386)||(28165061-28165105)
chr7 (261-297)||(28691964-28692000)
chr7 (393-441)||(36598302-36598350)
chr7 (261-289)||(39539904-39539932)
[»] chr1 (7 HSPs)
chr1 (406-446)||(4033958-4033998)
chr1 (261-291)||(16322726-16322756)
chr1 (342-384)||(27738238-27738280)
chr1 (342-384)||(34179930-34179972)
chr1 (262-296)||(44936741-44936775)
chr1 (411-455)||(15581348-15581392)
chr1 (411-455)||(35017676-35017720)
[»] chr8 (10 HSPs)
chr8 (392-455)||(6950397-6950460)
chr8 (265-330)||(43208249-43208315)
chr8 (342-386)||(45071172-45071216)
chr8 (392-448)||(45098912-45098968)
chr8 (392-467)||(7918701-7918776)
chr8 (406-455)||(1561366-1561415)
chr8 (259-288)||(3179652-3179681)
chr8 (411-448)||(39049366-39049403)
chr8 (264-296)||(6950223-6950255)
chr8 (393-453)||(24326107-24326167)
[»] scaffold0426 (1 HSPs)
scaffold0426 (261-296)||(4027-4062)
[»] chr3 (6 HSPs)
chr3 (261-296)||(21574376-21574411)
chr3 (261-296)||(37308216-37308251)
chr3 (265-313)||(23785141-23785190)
chr3 (261-290)||(34857395-34857424)
chr3 (299-355)||(659910-659965)
chr3 (261-297)||(44240047-44240083)
[»] chr2 (8 HSPs)
chr2 (342-385)||(7103540-7103583)
chr2 (260-330)||(10198594-10198665)
chr2 (392-455)||(28803462-28803525)
chr2 (404-454)||(13866965-13867015)
chr2 (261-297)||(5752750-5752786)
chr2 (259-291)||(5826142-5826174)
chr2 (411-455)||(15370255-15370299)
chr2 (411-459)||(31228765-31228813)


Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 4273818 - 4273431
Alignment:
Q  1 tggctgcaacccaaaggatctgagcatcagtgagctagaacgtctcactcgtgttttcacccaaaagattcatgacctcattggcattcatagggatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273818 tggctgcaacccaaaggatctgagcatcagtgagctagaacgtctcactcgtgttttcacccaaaagattcatgacctcattggcattcatagggatgtt 4273719  T
Q  101 cctgcccctgatatgggaactaattcacagacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273718 cctgcccctgatatgggaactaattcacagacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagc 4273619  T
Q  201 ctattgtaagtgtataataatatttcataatcactgccaactgtagttttaggccctaagttggataaacaacttaattaagtgcttatagtataattct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273618 ctattgtaagtgtataataatatttcataatcactgccaactgtagttttaggccctaagttggataaacaacttaattaagtgcttatagtataattct 4273519  T
Q  301 tatcatataaatagttctgtataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctataatctgtttttaca 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273518 tatcatataaatagttctgtataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctataatctgtttttaca 4273431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 463 - 552
Target Start/End: Complemental strand, 4273273 - 4273184
Alignment:
Q  463 aaacatggtgaaccaaggctaaggcttgttgtctaaattttgtgaccaacaattccttgaacatgattgtctcttataggaggatacatg 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4273273 aaacatggtgaaccaaggctaaggcttgttgtctaaattttgtgaccaacaattccttgaacatgattgtctcttataggaggatacatg 4273184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 4273371 - 4273303
Alignment:
Q  393 tgtttccataggttctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaataatcaatt 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4273371 tgtttccataggttctctcaaacaatctcacaaatgtttatgccaatagacaagctaaaataatcaatt 4273303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 455
Target Start/End: Complemental strand, 11095489 - 11095427
Alignment:
Q  393 tgtttccataggttctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaataa 455  Q
    |||||||| | ||||||||||||||| |||||| |||||||| ||||||| ||||| ||||||    
T  11095489 tgtttccacaagttctctcaaacaatatcacaagtgtttatgtcagtagataagcttaaataa 11095427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 330
Target Start/End: Complemental strand, 20982321 - 20982251
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctatt 330  Q
    ||||||||||||||| ||||||||||||||| |||| | |||||||||||| |  || |||||||||||||    
T  20982321 ttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatt 20982251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 455
Target Start/End: Complemental strand, 10771868 - 10771820
Alignment:
Q  407 ctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaataa 455  Q
    ||||||||||||||||||| || ||||||||||||| ||||| ||||||    
T  10771868 ctctcaaacaatctcacaagtgcttatgccagtagataagctcaaataa 10771820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 23137366 - 23137401
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataa 296  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23137366 ttggataaacaacttaattgagtgcttatagtataa 23137401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 11457008 - 11457111
Alignment:
Q  262 tggataaacaacttaattaagtgcttatagtataatt-cttatcatataaatagttctgtataagctat---taacgaaagataaaaataaagtcaaatt 357  Q
    |||||||||| |||||| ||| |||||||| |||| | ||||||||| ||||  || |||||||||| |   |||||||||||| || ||||||||||||    
T  11457008 tggataaacagcttaatcaagcgcttatagcataagtgcttatcatacaaatgtttatgtataagctttctataacgaaagatataa-taaagtcaaatt 11457106  T
Q  358 gtttt 362  Q
    |||||    
T  11457107 gtttt 11457111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 330
Target Start/End: Original strand, 26516182 - 26516252
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctatt 330  Q
    |||||||||||||||||||||| |||||||| ||||   |||||||||||| |  || |||||||||||||    
T  26516182 ttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatt 26516252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 36539158 - 36539191
Alignment:
Q  265 ataaacaacttaattaagtgcttatagtataatt 298  Q
    |||||| |||||||||||||||||||||||||||    
T  36539158 ataaactacttaattaagtgcttatagtataatt 36539191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 37874020 - 37873971
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataattcttatcatataa 310  Q
    |||||||||| |||||||||||||||||||| || || ||||||| ||||    
T  37874020 ttggataaaccacttaattaagtgcttatagcatgatccttatcacataa 37873971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 1550812 - 1550840
Alignment:
Q  261 ttggataaacaacttaattaagtgcttat 289  Q
    |||||||||||||||||||||||||||||    
T  1550812 ttggataaacaacttaattaagtgcttat 1550840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 289
Target Start/End: Complemental strand, 7026439 - 7026411
Alignment:
Q  261 ttggataaacaacttaattaagtgcttat 289  Q
    |||||||||||||||||||||||||||||    
T  7026439 ttggataaacaacttaattaagtgcttat 7026411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 467
Target Start/End: Complemental strand, 11297191 - 11297115
Alignment:
Q  392 ttgtttccataggttctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaataa-tcaatttaaaca 467  Q
    ||||||||||| | ||| ||||||| ||| |||| ||||||||||| |||| ||||| |||||| |||||| |||||    
T  11297191 ttgtttccataagctctttcaaacagtcttacaagtgtttatgccactagataagcttaaataagtcaattcaaaca 11297115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 32222901 - 32222933
Alignment:
Q  264 gataaacaacttaattaagtgcttatagtataa 296  Q
    |||||||| ||||||||||||||||||||||||    
T  32222901 gataaacagcttaattaagtgcttatagtataa 32222933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 41211158 - 41211273
Alignment:
Q  5 tgcaacccaaaggatctgagcatcagtgagctagaacgtctcactcgtgttttcacccaaaagattcatgacctcattggcattcatagggatgttcctg 104  Q
    |||||||| | ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||  | || ||| ||||  | |||||||| |    
T  41211158 tgcaacccgagggatctgagcatcagtgagttagaacgtctaactcgggttttcacccaaaagattcatgatttaatcggcgttcagcgagatgttccag 41211257  T
Q  105 cccctgatatgggaac 120  Q
    | ||||||||||||||    
T  41211258 ctcctgatatgggaac 41211273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 41211373 - 41211455
Alignment:
Q  129 agacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagcctattgtaagt 211  Q
    |||| ||||| |||||||| ||||| ||||| || |||||||| ||||| || || |||||||| || |||||||||||||||    
T  41211373 agaccatggcatggattctagatgagtattctaaatttcatggacattcgcctgctgttgtgaccggaaagcctattgtaagt 41211455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 33640992 - 33641042
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataat-tcttatcatataa 310  Q
    ||||||||||| ||||||||||||||||||| |||||  ||||||||||||    
T  33640992 ttggataaacagcttaattaagtgcttatagaataatcgcttatcatataa 33641042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 46053584 - 46053653
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtat-aattcttatcatataaatagttctgtataagctat 329  Q
    ||||||||||| |||||||||| |||||||| || | | |||||||||||| || || ||||||||||||    
T  46053584 ttggataaacagcttaattaagcgcttatagcatgagtacttatcatataagtacttatgtataagctat 46053653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 469
Target Start/End: Original strand, 2811560 - 2811624
Alignment:
Q  406 tctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaataa-tcaatttaaacatg 469  Q
    ||||||||||| ||||| ||||| ||||||||||||| || || |||||| |||||| |||||||    
T  2811560 tctctcaaacagtctcataaatgcttatgccagtagataacctcaaataagtcaattcaaacatg 2811624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 6427918 - 6427946
Alignment:
Q  261 ttggataaacaacttaattaagtgcttat 289  Q
    |||||||||||||||||||||||||||||    
T  6427918 ttggataaacaacttaattaagtgcttat 6427946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 8423023 - 8422987
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataat 297  Q
    |||||||||||||||||||||||| |||||| |||||    
T  8423023 ttggataaacaacttaattaagtgtttatagcataat 8422987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 40709565 - 40709537
Alignment:
Q  262 tggataaacaacttaattaagtgcttata 290  Q
    |||||||||||||||||||||||||||||    
T  40709565 tggataaacaacttaattaagtgcttata 40709537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 55437464 - 55437420
Alignment:
Q  267 aaacaacttaattaagtgcttatagtataatt-cttatcatataa 310  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||    
T  55437464 aaacaacttaattaaatgcttatagtataattggttatcatataa 55437420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 10151245 - 10151328
Alignment:
Q  128 cagacaatggcttggattcttgatgaatattcaaagtttcatggtcattcaccagcagttgtgactggcaagcctattgtaagt 211  Q
    ||||||||||| ||||| || ||||| |||||||| |||||||||||||| || ||||| |||||||| || ||||| ||||||    
T  10151245 cagacaatggcatggatactagatgagtattcaaaatttcatggtcattctcctgcagtagtgactggaaaacctatagtaagt 10151328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 4247270 - 4247220
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataa 310  Q
    ||||||||||||||||||||||||||||||| |||| | ||||||||||||    
T  4247270 ttggataaacaacttaattaagtgcttatagcataagtacttatcatataa 4247220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 10400192 - 10400273
Alignment:
Q  299 cttatcatataaatagttctgtataagctatt----aacgaaagataaaaataaagtcaaattgttttaaaataagctataa 376  Q
    ||||||||||||||  || |||||||||||||    ||  |||||||||||||||||||||||||| | | |||||||||||    
T  10400192 cttatcatataaatgtttatgtataagctattttataataaaagataaaaataaagtcaaattgttatcatataagctataa 10400273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 7268085 - 7268050
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataa 296  Q
    |||||||||||||||||||||||| |||||||||||    
T  7268085 ttggataaacaacttaattaagtgtttatagtataa 7268050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 448
Target Start/End: Original strand, 2735147 - 2735201
Alignment:
Q  394 gtttccataggttctctcaaacaatctcacaaatgtttatgccagtagacaagct 448  Q
    |||| |||| ||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  2735147 gttttcataagttatctcaaacagtctcacagatgtttatgccactagacaagct 2735201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 4003785 - 4003751
Alignment:
Q  262 tggataaacaacttaattaagtgcttatagtataa 296  Q
    |||||||||||||||||||||||||||||| ||||    
T  4003785 tggataaacaacttaattaagtgcttatagcataa 4003751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 29274329 - 29274287
Alignment:
Q  342 aaaataaagtcaaattgttttaaaataagctataatctgtttt 384  Q
    ||||||||||||||||||||| | ||||||||||| |||||||    
T  29274329 aaaataaagtcaaattgttttcatataagctataaactgtttt 29274287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 295
Target Start/End: Complemental strand, 31808012 - 31807978
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtata 295  Q
    ||||||||||||||||||||||||||||| |||||    
T  31808012 ttggataaacaacttaattaagtgcttatggtata 31807978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 375
Target Start/End: Original strand, 1904762 - 1904818
Alignment:
Q  318 tgtataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctata 375  Q
    |||||||||||||||| ||| |||||| |||||||||||| |||| | ||||||||||    
T  1904762 tgtataagctattaactaaatataaaa-taaagtcaaattatttttatataagctata 1904818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 375
Target Start/End: Original strand, 1908995 - 1909051
Alignment:
Q  318 tgtataagctattaacgaaagataaaaataaagtcaaattgttttaaaataagctata 375  Q
    |||||||||||||||| ||| |||||| |||||||||||| |||| | ||||||||||    
T  1908995 tgtataagctattaactaaatataaaa-taaagtcaaattatttttatataagctata 1909051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 3155060 - 3155129
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctat 329  Q
    |||||||||||||||| ||||| |||||||| ||||    ||||||||||||| ||| ||||||||||||    
T  3155060 ttggataaacaacttatttaagcgcttatagcataagcgtttatcatataaatggttatgtataagctat 3155129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 290
Target Start/End: Complemental strand, 14340989 - 14340960
Alignment:
Q  261 ttggataaacaacttaattaagtgcttata 290  Q
    ||||||||||||||||||||||||||||||    
T  14340989 ttggataaacaacttaattaagtgcttata 14340960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 383
Target Start/End: Original strand, 2206474 - 2206601
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataa-ttcttatcatataaatagttctgtataagctat-----taacgaaagataaaaataaagtcaa 354  Q
    ||||||||||  ||||||||||||||||||| ||||  ||||||| |||||  | ||||||||||| |||     |||| |||||| ||||||||||  |    
T  2206474 ttggataaacttcttaattaagtgcttatagcataagctcttatcgtataagcatttctgtataagttatttttataacaaaagat-aaaataaagtata 2206572  T
Q  355 attgttttaaaataagctataatctgttt 383  Q
    |||||||| | ||||||||| | ||||||    
T  2206573 attgtttttatataagctatgaactgttt 2206601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 8470156 - 8470124
Alignment:
Q  264 gataaacaacttaattaagtgcttatagtataa 296  Q
    |||||||||||||||||||||||||| ||||||    
T  8470156 gataaacaacttaattaagtgcttatcgtataa 8470124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 10154287 - 10154335
Alignment:
Q  392 ttgtttccataggttctctcaaacaatctcacaaatgtttatgccagta 440  Q
    ||||||||||||||||||||||||| | || ||||| |||||| |||||    
T  10154287 ttgtttccataggttctctcaaacagtttcccaaatatttatgtcagta 10154335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 22742336 - 22742380
Alignment:
Q  342 aaaataaagtcaaattgttttaaaataagctataatctgttttta 386  Q
    ||||||||||||||||||||| | ||||||||||| || ||||||    
T  22742336 aaaataaagtcaaattgttttcatataagctataagctattttta 22742380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 289
Target Start/End: Original strand, 34404322 - 34404350
Alignment:
Q  261 ttggataaacaacttaattaagtgcttat 289  Q
    |||||||||||||||||||||||||||||    
T  34404322 ttggataaacaacttaattaagtgcttat 34404350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 36537983 - 36538027
Alignment:
Q  392 ttgtttccataggttctctcaaacaatctcacaaatgtttatgcc 436  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||    
T  36537983 ttgtttccataagttctctcaaacaatctcacaagtgtttatgcc 36538027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 376
Target Start/End: Original strand, 49060424 - 49060544
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataat-tcttatcatataaatagttctgtataagctat-----taacgaaagataaaaataaagtcaa 354  Q
    |||| |||||| ||||||||||  |||||||||||||  |||||||||||| || || ||||||||||||     |||| ||| || |||||||||||||    
T  49060424 ttgggtaaacagcttaattaagcacttatagtataatggcttatcatataagtatttatgtataagctatttctataacaaaaaat-aaaataaagtcaa 49060522  T
Q  355 attgttttaaaataagctataa 376  Q
    ||| |||| | |||||||||||    
T  49060523 attatttttatataagctataa 49060544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 23918927 - 23918966
Alignment:
Q  342 aaaataaagtcaaattgttttaaaataagctataatctgt 381  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  23918927 aaaataaagtcaaattgttttcatataagctataatctgt 23918966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 389
Target Start/End: Complemental strand, 48157220 - 48157173
Alignment:
Q  342 aaaataaagtcaaattgttttaaaataagctataatctgtttttacaa 389  Q
    |||||||||| |||||||||||| |||||||||||| |||||| ||||    
T  48157220 aaaataaagtgaaattgttttaatataagctataatttgttttcacaa 48157173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 6977492 - 6977541
Alignment:
Q  393 tgtttccataggttctctcaaacaatctcacaaatgtttatgccagtaga 442  Q
    |||||||||| | || |||||||||||||||||||| |||||||| ||||    
T  6977492 tgtttccataagctcactcaaacaatctcacaaatgcttatgccaataga 6977541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 289
Target Start/End: Complemental strand, 657870 - 657842
Alignment:
Q  261 ttggataaacaacttaattaagtgcttat 289  Q
    |||||||||||||||||||||||||||||    
T  657870 ttggataaacaacttaattaagtgcttat 657842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 28165061 - 28165105
Alignment:
Q  342 aaaataaagtcaaattgttttaaaataagctataatctgttttta 386  Q
    ||||| ||||||||||||||||| ||||||||||| |||| ||||    
T  28165061 aaaatgaagtcaaattgttttaatataagctataaactgtcttta 28165105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 28692000 - 28691964
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataat 297  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  28692000 ttggataaacaacttaattaagtgtttataatataat 28691964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 36598350 - 36598302
Alignment:
Q  393 tgtttccataggttctctcaaacaatctcacaaatgtttatgccagtag 441  Q
    |||||||||| | |||||||||||||||||||| || ||||| ||||||    
T  36598350 tgtttccataagctctctcaaacaatctcacaattgcttatgtcagtag 36598302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 289
Target Start/End: Complemental strand, 39539932 - 39539904
Alignment:
Q  261 ttggataaacaacttaattaagtgcttat 289  Q
    |||||||||||||||||||||||||||||    
T  39539932 ttggataaacaacttaattaagtgcttat 39539904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 4033998 - 4033958
Alignment:
Q  406 tctctcaaacaatctcacaaatgtttatgccagtagacaag 446  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  4033998 tctctcaaacaatctcacaagtgtttatgccagtagacaag 4033958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 291
Target Start/End: Original strand, 16322726 - 16322756
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatag 291  Q
    |||||||||||||||||||||||||||||||    
T  16322726 ttggataaacaacttaattaagtgcttatag 16322756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 27738280 - 27738238
Alignment:
Q  342 aaaataaagtcaaattgttttaaaataagctataatctgtttt 384  Q
    ||||||||||||||||||||| | |||||||||||| ||||||    
T  27738280 aaaataaagtcaaattgttttcatataagctataatttgtttt 27738238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 34179972 - 34179930
Alignment:
Q  342 aaaataaagtcaaattgttttaaaataagctataatctgtttt 384  Q
    |||||||||||||||||||||||  |||||||||| |||||||    
T  34179972 aaaataaagtcaaattgttttaatctaagctataaactgtttt 34179930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 44936775 - 44936741
Alignment:
Q  262 tggataaacaacttaattaagtgcttatagtataa 296  Q
    |||||||||||||||||||| ||||||||||||||    
T  44936775 tggataaacaacttaattaaatgcttatagtataa 44936741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 15581348 - 15581392
Alignment:
Q  411 caaacaatctcacaaatgtttatgccagtagacaagctaaaataa 455  Q
    ||||||||||||||| || ||||| ||||||| ||||||||||||    
T  15581348 caaacaatctcacaagtgcttatgtcagtagataagctaaaataa 15581392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 35017676 - 35017720
Alignment:
Q  411 caaacaatctcacaaatgtttatgccagtagacaagctaaaataa 455  Q
    ||||||||||||||| ||||||||||| |||| ||||| ||||||    
T  35017676 caaacaatctcacaagtgtttatgccaatagataagctcaaataa 35017720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 6950397 - 6950460
Alignment:
Q  392 ttgtttccataggttctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaataa 455  Q
    |||||| |||| | |||| |||||||||||||||||||||||||||||||| || || ||||||    
T  6950397 ttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataaactcaaataa 6950460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 43208315 - 43208249
Alignment:
Q  265 ataaacaacttaattaagtgcttatagtataattctt-atcatataaatagttctgtataagctatt 330  Q
    ||||||||||||||||||||||||||||||||   || ||||||||| || || |||||||||||||    
T  43208315 ataaacaacttaattaagtgcttatagtataaacgttcatcatataagtatttatgtataagctatt 43208249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 45071172 - 45071216
Alignment:
Q  342 aaaataaagtcaaattgttttaaaataagctataatctgttttta 386  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||    
T  45071172 aaaataaagtcaaattgtttttatataagctataagctgttttta 45071216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 45098968 - 45098912
Alignment:
Q  392 ttgtttccataggttctctcaaacaatctcacaaatgtttatgccagtagacaagct 448  Q
    |||||| |||||||||||  |||||||||| ||| |||||||||||||||| |||||    
T  45098968 ttgttttcataggttctcggaaacaatctctcaagtgtttatgccagtagataagct 45098912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 467
Target Start/End: Complemental strand, 7918776 - 7918701
Alignment:
Q  392 ttgtttccataggttctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaataatcaatttaaaca 467  Q
    |||||| |||| | |||| |||||| |||||||| ||||||||| |||||| ||| | |||||||||||| |||||    
T  7918776 ttgttttcataagctctcccaaacagtctcacaagtgtttatgctagtagataagtttaaataatcaattcaaaca 7918701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 1561366 - 1561415
Alignment:
Q  406 tctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaataa 455  Q
    |||||||||||||||||||| ||||||||||| |||| ||| | ||||||    
T  1561366 tctctcaaacaatctcacaagtgtttatgccattagataagatcaaataa 1561415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 3179652 - 3179681
Alignment:
Q  259 agttggataaacaacttaattaagtgctta 288  Q
    ||||||||||||||||||||||||||||||    
T  3179652 agttggataaacaacttaattaagtgctta 3179681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 39049366 - 39049403
Alignment:
Q  411 caaacaatctcacaaatgtttatgccagtagacaagct 448  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  39049366 caaacaatctcacaaatgtttatgctagtagataagct 39049403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 6950223 - 6950255
Alignment:
Q  264 gataaacaacttaattaagtgcttatagtataa 296  Q
    |||||||||||||||||||||||||||| ||||    
T  6950223 gataaacaacttaattaagtgcttatagcataa 6950255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 24326107 - 24326167
Alignment:
Q  393 tgtttccataggttctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaat 453  Q
    |||||||||| | |||| |||||| |||||||| || ||||||||||||| ||||| ||||    
T  24326107 tgtttccataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 4027 - 4062
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataa 296  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4027 ttggataaacaacttaattgagtgcttatagtataa 4062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 21574376 - 21574411
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataa 296  Q
    |||||||||| |||||||||||||||||||||||||    
T  21574376 ttggataaactacttaattaagtgcttatagtataa 21574411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 37308251 - 37308216
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataa 296  Q
    ||||||||||||||||||||||||||||||| ||||    
T  37308251 ttggataaacaacttaattaagtgcttatagcataa 37308216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 23785141 - 23785190
Alignment:
Q  265 ataaacaacttaattaagtgcttatagtat-aattcttatcatataaata 313  Q
    ||||||||||||||||||||||||||| || |||  ||||||||||||||    
T  23785141 ataaacaacttaattaagtgcttatagcataaatgtttatcatataaata 23785190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 290
Target Start/End: Original strand, 34857395 - 34857424
Alignment:
Q  261 ttggataaacaacttaattaagtgcttata 290  Q
    ||||||||||||||||||||||||||||||    
T  34857395 ttggataaacaacttaattaagtgcttata 34857424  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 659965 - 659910
Alignment:
Q  299 cttatcatataaatagttctgtataagctattaacgaaagataaaaataaagtcaaa 355  Q
    ||||||||||||||  || | |||||||||||||| |||||| ||||||||||||||    
T  659965 cttatcatataaatgcttatatataagctattaacaaaagat-aaaataaagtcaaa 659910  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 44240047 - 44240083
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataat 297  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  44240047 ttggataaacaacttaagtaagtgcttatagcataat 44240083  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 385
Target Start/End: Complemental strand, 7103583 - 7103540
Alignment:
Q  342 aaaataaagtcaaattgttttaaaataagctataatctgttttt 385  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||    
T  7103583 aaaataaagtcaaactgttttaatataagctataagctgttttt 7103540  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 10198665 - 10198594
Alignment:
Q  260 gttggataaacaacttaattaagtgcttatagtat-aattcttatcatataaatagttctgtataagctatt 330  Q
    ||||||| ||||||||||||| |||||||||| || | | |||||||||||| || || |||||||||||||    
T  10198665 gttggattaacaacttaattaggtgcttatagcatgagtgcttatcatataagtacttttgtataagctatt 10198594  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 455
Target Start/End: Complemental strand, 28803525 - 28803462
Alignment:
Q  392 ttgtttccataggttctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaataa 455  Q
    ||||||||||| ||||||||||||| |||||||  || ||||||| ||||| ||||| ||||||    
T  28803525 ttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaaataa 28803462  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 13866965 - 13867015
Alignment:
Q  404 gttctctcaaacaatctcacaaatgtttatgccagtagacaagctaaaata 454  Q
    ||||||||||||| |||||||| |||||||| ||||||| ||||| |||||    
T  13866965 gttctctcaaacagtctcacaagtgtttatggcagtagataagctcaaata 13867015  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 5752786 - 5752750
Alignment:
Q  261 ttggataaacaacttaattaagtgcttatagtataat 297  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  5752786 ttggataaacaacttaattaactgcttatagcataat 5752750  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 5826142 - 5826174
Alignment:
Q  259 agttggataaacaacttaattaagtgcttatag 291  Q
    |||||||||||||||||||||||| ||||||||    
T  5826142 agttggataaacaacttaattaagagcttatag 5826174  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 15370299 - 15370255
Alignment:
Q  411 caaacaatctcacaaatgtttatgccagtagacaagctaaaataa 455  Q
    |||||| ||||||||||| ||||||||||||| ||||| ||||||    
T  15370299 caaacagtctcacaaatgcttatgccagtagataagctcaaataa 15370255  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 459
Target Start/End: Complemental strand, 31228813 - 31228765
Alignment:
Q  411 caaacaatctcacaaatgtttatgccagtagacaagctaaaataatcaa 459  Q
    |||||| |||||||| ||||||| |||||||||||||| || |||||||    
T  31228813 caaacagtctcacaagtgtttataccagtagacaagctcaattaatcaa 31228765  T

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