View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1783_low_18 (Length: 490)
Name: NF1783_low_18
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_18 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Complemental strand, 5171917 - 5171451
Alignment:
| Q |
18 |
aaccataaatagtagttgaaacaaaaataatagtaaaagtac-ttcaacatgtagtgaaccaataaattgattaccacccaagtccaatagttctagccg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5171917 |
aaccataaatagtagttgaaacaaaaataatagtaaaagtaccttcaacatgtagtgaaccaataaattgattaccatccaagtccaatagttctagccg |
5171818 |
T |
|
| Q |
117 |
actaaatttggcaaaatctgttgcaaggacataatannnnnnnnnnaaaaatgaaactaaaaacatttgccataatataataattgaagatgcgtaccta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
5171817 |
actaaatttggcaaaatctgttgcaaggacataatacttttttttttaaa-tgaaactaaaaacatttgccataatatattatttgaagatgcgtaccta |
5171719 |
T |
|
| Q |
217 |
aagtggagagagaacaattgaacttgttatctctcaaaatcaaactccttgatgatgtgaatccatgcaaacttgttatgatattacagtttagatcatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
5171718 |
aagtggagagagaacaattgaacttgttatctctcaaaatcaaactccttaatgatatgaaaccatacaaacttgttatgatattgcagtttagctcatt |
5171619 |
T |
|
| Q |
317 |
ataggaaaggtctaagacctccaactcctttgatctcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctaccaat |
416 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5171618 |
atgggaaaggtctaagacctccaactcctttgatctcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctaccaat |
5171519 |
T |
|
| Q |
417 |
gattcataaccagtttttcattttatttaaagtctcttattatcgttaataattaatattttcttcga |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
5171518 |
gattcataaccagtttttcattttatttaaagtctcttattatcgttaaaaattaatattttcttcga |
5171451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 4843757 - 4844221
Alignment:
| Q |
18 |
aaccataaatagtagttgaaacaaaaataatagtaaaagtac-ttcaacatgtagtgaaccaataaattgattaccacccaagtccaatagttctagccg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4843757 |
aaccataaatagtagttgaaacaaaaataatagtaaaagtaccttcaacatgtagtgaaccaataaattgattaccacccaagtccaatagttctagctg |
4843856 |
T |
|
| Q |
117 |
actaaatttggcaaaatctgttgcaaggacataatannnnnnnnnnaaaaatgaaactaaaaacatttgccataatataataattgaagatgcgtaccta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4843857 |
actaaatttggcaaaatctgttgcaaggacataatatttttttttttaaaatgaaactaaaaacatttgccataatataataattgaagatgcgtaccta |
4843956 |
T |
|
| Q |
217 |
aagtggagagagaacaattgaacttgttatctctcaaaatcaaactccttgatgatgtgaatccatgcaaacttgttatgatattacagtttagatcatt |
316 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | | ||||||||||||| ||||| |||| ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4843957 |
aagtggagagagaacaattgaactcgttatcatttagaatcaaactccttaatgatatgaaaccatgcaaacttgttatgatattgcagtttagctcatt |
4844056 |
T |
|
| Q |
317 |
ataggaaaggtctaagacctccaactcctttgatctcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctaccaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4844057 |
ataggaaaggtctaagacctccaactcctttgatctcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctaccaat |
4844156 |
T |
|
| Q |
417 |
gattcataaccagtttttcattttatttaaagtctcttattatcgttaataattaatattttctt |
481 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
4844157 |
gattcataaccactttttcattttatttaaagtctcttatcatcgttaaaaattaatattttctt |
4844221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 5155325 - 5154863
Alignment:
| Q |
18 |
aaccataaatagtagttgaaacaaaaataatagtaaaagtac-ttcaacatgtagtgaaccaataaattgattaccacccaagtccaatagttctagccg |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
5155325 |
aaccataaatagtagttgaaataaaaataatagtaaaagtaccttcaacatgtagtgaaccaatcaattgattaccatccaagtccaatagttctagccg |
5155226 |
T |
|
| Q |
117 |
actaaatttggcaaaatctgttgcaaggacataatannnnnnnnnn-aaaaatgaaactaaaaacatttgccataatataataattgaagatgcgtacct |
215 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
5155225 |
attaaatttagcaaaatctgttgaaaggacataatatagttctttttaaaaatgaaaataaaaacattcatcataatataagaattgaagatgtgtacct |
5155126 |
T |
|
| Q |
216 |
aaagtggagagagaacaattgaacttgttatctctcaaaatcaaactccttgatgatgtgaatccatgcaaacttgttatgatattacagtttagatcat |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||| |
|
|
| T |
5155125 |
aaagtggagagagaacaattgaagttgttgtatctcagaatcaaactccttaatgatgtgaatccatgcaaacttgttatgatattgcagttcagcccat |
5155026 |
T |
|
| Q |
316 |
tataggaaaggtctaagacctccaactcctttgatctcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctaccaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5155025 |
tataggaaaggtctaagacctccaactcctttgatctcaaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctaccaa |
5154926 |
T |
|
| Q |
416 |
tgattcataaccagtttttcattttatttaaagtctcttattatcgttaataattaatatttt |
478 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5154925 |
tgatttataaccagtttttcattttatttaaagtctcttattatcgttaataattaatatttt |
5154863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 33 - 481
Target Start/End: Complemental strand, 5194535 - 5194081
Alignment:
| Q |
33 |
ttgaaacaaaaataatagtaaaagtac-ttcaacatgtagtgaaccaataaattgattaccacccaagtccaatagttctagccgactaaatttggcaaa |
131 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5194535 |
ttgaaacaacaataacagtaaaagtaccttcaacatgtagagaaccagtaaattgattaccacccaagtccaatagttctagccgactaaatttggcaaa |
5194436 |
T |
|
| Q |
132 |
atctgttgcaaggacataat--annnnnnnnnnaaaaatgaaactaaaaacatttgccataatataataattgaagatgcgtacctaaagtggagagaga |
229 |
Q |
| |
|
|||||||||||||||||||| | | |||||| | ||||| |||| | |||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
5194435 |
atctgttgcaaggacataatttatttctttttaataaatgataataaaatcattcgtcataatataagaattgaagatgtttacctaaagtggagagaga |
5194336 |
T |
|
| Q |
230 |
acaattgaacttgttatctctcaaaatcaaactccttgatgatgtgaatccatgcaaacttgttatgatattacagtttagatcattataggaaaggtct |
329 |
Q |
| |
|
||||||||| ||||| | |||| ||||||||||||| |||||||||||||||||||||||||||| || || || ||||| ||| ||||||||| |
|
|
| T |
5194335 |
acaattgaagttgttgtaactcagaatcaaactccttaatgatgtgaatccatgcaaacttgttattatgttgcaatttagcctatttcctgaaaggtct |
5194236 |
T |
|
| Q |
330 |
aagacctccaactcctttgatctcgaaaatccttcaacaatata----cataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataa |
425 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5194235 |
aagacttccaactcctttgatctcgaaaatccttcaacaatatatatacataatgaaaagcttttgttaattaatttcaattcctaccgatgattcataa |
5194136 |
T |
|
| Q |
426 |
ccagtttttcattttatttaaagtctcttattatcgttaataattaatattttctt |
481 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
5194135 |
ccactttttcattttatttaaagtctcttattatcgttaaaaatt-atattttctt |
5194081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 96 - 381
Target Start/End: Complemental strand, 5181274 - 5180987
Alignment:
| Q |
96 |
caagtccaatagttctagccgactaaatttggcaaaatctgttgcaaggacataatannnnnnnnnn--aaaaatgaaactaaaaacatttgccataata |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||| |
|
|
| T |
5181274 |
caagtccaatagttctagccgactaaatttggcaaaatctgtagcaaggacataatatagttctttttaaaaaatgaaaataaaaacattcatcataata |
5181175 |
T |
|
| Q |
194 |
taataattgaagatgcgtacctaaagtggagagagaacaattgaacttgttatctctcaaaatcaaactccttgatgatgtgaatccatgcaaacttgtt |
293 |
Q |
| |
|
||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||| || | ||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
5181174 |
taagaattgaagatgtgtaccgaaagtggagaaagaacaattgaacttgttatcacttagaatcaaactccttaatgatgtgaatccatgcaaacttgat |
5181075 |
T |
|
| Q |
294 |
atgatattacagtttagatcattataggaaaggtctaagacctccaactcctttgatctcgaaaatccttcaacaatatacataatga |
381 |
Q |
| |
|
||||| || || || || ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5181074 |
atgatgttgcaattcagcctatttcctgaaaggtctaagacttccaactcctttgatctcgaaaatccttgaacaatatacataatga |
5180987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 376 - 481
Target Start/End: Complemental strand, 5180924 - 5180819
Alignment:
| Q |
376 |
taatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaataattaatat |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
5180924 |
taatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtttcttattatcgttaaaaattaatat |
5180825 |
T |
|
| Q |
476 |
tttctt |
481 |
Q |
| |
|
|||||| |
|
|
| T |
5180824 |
tttctt |
5180819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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