View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_24 (Length: 439)
Name: NF1783_low_24
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 243 - 433
Target Start/End: Complemental strand, 8880470 - 8880281
Alignment:
| Q |
243 |
ttgttagacaatgatttgtgtttggaagggaattctcatattctgcttattattaatgttaacttttagcttatgttctgcagctaacaaactcatagtt |
342 |
Q |
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| T |
8880470 |
ttgttagacaatgatttgtgtttggaagggaattctcatattctgcttattattaatgttaacttt-agcttgtgttctgcagctaacaaacttatagtt |
8880372 |
T |
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| Q |
343 |
ggatttattccgcagttatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaataatct |
433 |
Q |
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| T |
8880371 |
ggatttattccgcaggtatacatcctatgcaggtttatttccattgttgtcaagcgggctactgccattactcgaggttgaagaattatct |
8880281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 8880697 - 8880538
Alignment:
| Q |
16 |
ctgctcgtggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtcagcttgaggctaagaatccaacccccgcttccactgatgc |
115 |
Q |
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| T |
8880697 |
ctgctcgtggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagaatccaacccccgcttccactgatgc |
8880598 |
T |
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| Q |
116 |
tttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
175 |
Q |
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| T |
8880597 |
tttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
8880538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 8884795 - 8884662
Alignment:
| Q |
20 |
tcgtggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtcagcttgaggctaagaatccaacccccgcttccactgatgctttg |
119 |
Q |
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| T |
8884795 |
tcgtggattgaaagcgacgagtgaaactagagctgagattgttgagcttattactcagctggaagctaagaatcccacacctgcttccactgatgccttg |
8884696 |
T |
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| Q |
120 |
agtttgctcgatggaaaatggattcttgcgtaag |
153 |
Q |
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| T |
8884695 |
agtttgctcaatggaaaatggattcttgcgtaag |
8884662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 8884155 - 8884087
Alignment:
| Q |
359 |
tatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaa |
427 |
Q |
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| T |
8884155 |
tatacatcctttgccggtttatttccattgctttcgagcggactactgccattacttacggttgaagaa |
8884087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 243 - 433
Target Start/End: Complemental strand, 45073611 - 45073422
Alignment:
| Q |
243 |
ttgttagacaatgatttgtgtttggaagggaa-ttctcatattctgcttattattaatgttaacttttagcttatgttctgcagctaacaaactcatagt |
341 |
Q |
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| T |
45073611 |
ttgttagacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaactt--agtttgtgttctgcagctaacaaactcatggt |
45073514 |
T |
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| Q |
342 |
tggatttattccgcagttatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaataatct |
433 |
Q |
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| T |
45073513 |
tggatttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
45073422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 45073829 - 45073677
Alignment:
| Q |
23 |
tggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtcagcttgaggctaagaatccaacccccgcttccactgatgctttgagt |
122 |
Q |
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| T |
45073829 |
tggatcgaaagccgcgagtgagacaagagcggagatttttgagcttattagtcagctcgaggctaagtttcccacccctgcttccactgatgccttgagt |
45073730 |
T |
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| Q |
123 |
ttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
175 |
Q |
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| T |
45073729 |
ttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttc |
45073677 |
T |
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