View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_25 (Length: 436)
Name: NF1783_low_25
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 34342470 - 34342064
Alignment:
| Q |
17 |
aacaaggaaggtgtgttctgtgagagaagactcaccaacaatgaaagctatgcactcagagtaacaaaacttgttttcaaatcaagaaaactcagtggca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34342470 |
aacaaggaaggtgtgttctgtgagagaagactcaccaacaatgaaagctatgcactcagagtaacaaaacttgttttcaaatcaagaaaactcagtggca |
34342371 |
T |
|
| Q |
117 |
tactttcaccaaccattggaaaactcacagagctcaaagaaatctctctttcagacaacaaactcgttgaccaaataccaacctctatagttgactgcag |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34342370 |
tactttcaccaaccattggaaaactcacagagctgaaagaaatctctctttcagacaacaaactcgttgaccaaataccaacctctatagttgactgcag |
34342271 |
T |
|
| Q |
217 |
aaagcttgagattctgaaccttgctaataatcttttctctggtgaagttccttctgaattctcttctctcattcgtcttcgctttcttgatatctctgga |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34342270 |
aaagcttgagtttctgaaccttgctaataatcttttctctggtgaagttccttctgaattctcttctctcattcgtcttcgctttcttgatatctctgga |
34342171 |
T |
|
| Q |
317 |
aataaactgtctggaaacttgaatttccttaggtattttcccaatctggaaactctttctgttgcagacaatcacttcacaggaagagttccagtttcgg |
416 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34342170 |
aataaactttctggaaacttgaatttccttaggtattttcccaatctggaaactctttctgttgcagacaatcacttcacaggaagagttccagtttcgg |
34342071 |
T |
|
| Q |
417 |
ttcgttc |
423 |
Q |
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||||||| |
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| T |
34342070 |
ttcgttc |
34342064 |
T |
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