View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_27 (Length: 422)
Name: NF1783_low_27
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 51526182 - 51525779
Alignment:
| Q |
1 |
gtaccactaattttgcattcacggtagaactgacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgataaaatactgagaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51526182 |
gtaccactaattttgcattcacggtagaactgacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgataaaatactgagaggt |
51526083 |
T |
|
| Q |
101 |
cagagtctgatcttaacgccactgcttggtgcttctcggcacctgcggtgttctgaaatgaaatgtcgcgtgctatgaaccctctaccacttacagctgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51526082 |
cagagtctgatcttaacgccactgcttggtgcttctcggcacctgcggtgttctgaaatgaaatgtcgcgtgctatgaaccctctaccacttacagctgc |
51525983 |
T |
|
| Q |
201 |
acatgcccatacataaagaagaaattgtaatgaaaattaaggtatgataatcgggtgagacttgcatttcactaatgaagatcaagaaaattataattgc |
300 |
Q |
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| T |
51525982 |
acatgcccatacataaagaagaaattgtaatgaaaattaagatatgataatcgggtgagacttgcatttcactaatgaagatcaagaaaattataattgc |
51525883 |
T |
|
| Q |
301 |
agcacatgctaatttaatgttgcttattattagttagttatatgtatgcattatgttagttaatgtttacaataataggaccctagtgagactcatgatt |
400 |
Q |
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| T |
51525882 |
agcacatgctaatttaatgttgcttattattagttagttatatgtatgcattatgttagttaatgtttacaataataggaccctagtgagactcttgatt |
51525783 |
T |
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| Q |
401 |
cttg |
404 |
Q |
| |
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|||| |
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| T |
51525782 |
cttg |
51525779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 46 - 329
Target Start/End: Complemental strand, 51531884 - 51531600
Alignment:
| Q |
46 |
gtatataggctatcttgataaccgaatatcccacaccgataaaatactgagaggtcagagtctgatcttaacgccactgcttggtgcttctcggcacctg |
145 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| | |||||||| ||||| |
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| T |
51531884 |
gtatataggctatcttgataaccgaatatcccacaccgataaaatacagagaggtcagagtccgatcttaaagccactgcttgttccttctcgggacctg |
51531785 |
T |
|
| Q |
146 |
cggtgttctgaaatgaaatgtcgcgtgctatgaaccctctaccacttacagctgcacatgcccatacataaagaagaaattgtaatgaaaattaaggtat |
245 |
Q |
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||||||| ||||||||||||| || ||||||||||||||||||| | ||||||||||||| |||||||||||||||||| | ||||||||||||||| | |
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| T |
51531784 |
cggtgttttgaaatgaaatgttgcatgctatgaaccctctaccattaacagctgcacatgtccatacataaagaagaaaataaaatgaaaattaaggtgt |
51531685 |
T |
|
| Q |
246 |
gataatcgggtgagacttgcatttca-ctaatgaagatcaagaaaattataattgcagcacatgctaatttaatgttgcttatta |
329 |
Q |
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| T |
51531684 |
gagaattgaacctgacttacatttcagctattgaagattaagaaaattataattgcagaacatgataatataatgttacttatta |
51531600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 51531466 - 51531422
Alignment:
| Q |
346 |
atgcattatgttagttaatgtttacaataataggaccctagtgag |
390 |
Q |
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||||||||||| |||||||||||||||||||| | ||||| |||| |
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| T |
51531466 |
atgcattatgtcagttaatgtttacaataataaggccctactgag |
51531422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 19509834 - 19510033
Alignment:
| Q |
4 |
ccactaattttgcattcacggtagaactgacgcatggtgtgagtatataggctatcttgataaccgaatatcccacaccgataaaatactgagaggtcag |
103 |
Q |
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||||| ||||||||||| ||| |||| || ||||| || || || || ||||| ||||| ||||| || |||||||| ||||| ||||| |||||||||| |
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| T |
19509834 |
ccacttattttgcattctcggaagaattggcgcattgtatgcgtgtagaggctgtcttggtaaccaaaaatcccacatcgatagaatacagagaggtcag |
19509933 |
T |
|
| Q |
104 |
agtctgatcttaacgccactgcttggtgcttctcggcacctgcggtgttctgaaatgaaatgtcgcgtgctatgaaccctctaccacttacagctgcaca |
203 |
Q |
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|||| ||||||| |||||||||||||||||||| | |||||| ||||||||||| || ||||| | ||||||||| ||||||||||| ||||||||||| |
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| T |
19509934 |
agtcggatcttagtgccactgcttggtgcttctcaggacctgcagtgttctgaaaagagatgtctcttgctatgaatcctctaccactaacagctgcaca |
19510033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 1606529 - 1606599
Alignment:
| Q |
58 |
tcttgataaccgaatatcccacaccgataaaatactgagaggtcagagtctgatcttaacgccactgcttg |
128 |
Q |
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||||||||||| |||| |||||||||| || |||||||| || ||| ||||||||| |||||||||||| |
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| T |
1606529 |
tcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctgatcttagcgccactgcttg |
1606599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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