View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_3 (Length: 875)
Name: NF1783_low_3
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 166 - 736
Target Start/End: Complemental strand, 7932802 - 7932213
Alignment:
| Q |
166 |
ttgacagatagacagtgggaccatggtagtcaagtactttggggtaaccttagctaccacnnnnnnnnnnnnnn--aataaattggtgtaattttctatt |
263 |
Q |
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| T |
7932802 |
ttgacagatagacagtgggaccatggtagtcaagtactttggggtaaccttagctaccacttttttctttttttttaataaattggtgtaattttatatt |
7932703 |
T |
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| Q |
264 |
tagtctaatttagttagctcgcataaacttatttgcgaaaaattagtagaaataa----------------tagtagtacttaatagataaatttatctt |
347 |
Q |
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| T |
7932702 |
taatctaatttagttagctcgcataaacttatttgcgaaaaattagtagaaataaaaaaagacaaaattaatagtagtacttaatagataaatttatctt |
7932603 |
T |
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| Q |
348 |
tgtttttacaatttctgtctataataatcacacaaagagttcaatcaactacaaaa-ttgttaagataagattcatacaaatatattttaatttttcttt |
446 |
Q |
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| T |
7932602 |
tgtttttacaatttctgtctataataattacacaaagagttcaatcaacaacaaaaattgttaagataagattcataaaaatatattttattttttcttt |
7932503 |
T |
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| Q |
447 |
atattcacctctctagtaaagtttgggttagctccctcattagatggaggattaaaagttttcacggtcctcttcgttcttaaattggaacgattcttga |
546 |
Q |
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| T |
7932502 |
atattcacctctctagtaaagtttgggttagctccctcattagatggaggattagaggttttcacggtcctcttcgttcttaaattggaacgattcttga |
7932403 |
T |
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| Q |
547 |
tagcatttaacaaaattgaagaggaaaaatgagttgaattttgaatgcatattcatttttcattgcttgtgttgaatcggtttcaatcaaagtaatgact |
646 |
Q |
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| T |
7932402 |
tagtattcaacaaaattgaagagaaaaaatgagttgaattttgaatgcatattcatttttcattgcttgtgttgaatcggtttcaatcaaagtaatgact |
7932303 |
T |
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| Q |
647 |
cgggcgtaaggccaaatacgatcataaactttcacttctatatgagacaacgtctcattgttagagtttcgaataatttttaagtatggt |
736 |
Q |
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| T |
7932302 |
caggcgtaaggccaaataagatcataaactttcacttctatatgagacaacatctcattgttagagtttcgaataatttttaagtatggt |
7932213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 7935385 - 7935219
Alignment:
| Q |
10 |
attatactccaggtttactccttggattaatgtcttgtgcttatattggtcaagagcaattaaacattcacacttaaacgttcttttactccattcctca |
109 |
Q |
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| T |
7935385 |
attatactacatgttaactccttggattaatgtcttgtgcttataatggtcaagagcagttaaacattcacactcatacgttcttttactccattcctca |
7935286 |
T |
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| Q |
110 |
aatttacatc--cacgaaaccatggcttcttgtgcacactaacacacagtgacaacgtttgacagat |
174 |
Q |
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| T |
7935285 |
aatttacatccacacgaaaccatggcttcttgtacacactaacacacagtgacaacgtttgacagat |
7935219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 798 - 847
Target Start/End: Complemental strand, 7932073 - 7932024
Alignment:
| Q |
798 |
ggtaaattaatctactgaaattgacatgagagttgaatttgagtccttaa |
847 |
Q |
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| T |
7932073 |
ggtaaactaatctactgaaattgacatgagagtcgaatttgagtccttaa |
7932024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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