View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_30 (Length: 401)

Name: NF1783_low_30
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_30
NF1783_low_30
[»] chr3 (2 HSPs)
chr3 (11-383)||(38213980-38214352)
chr3 (11-383)||(38218199-38218571)
[»] chr8 (5 HSPs)
chr8 (11-245)||(42991291-42991523)
chr8 (52-245)||(35017979-35018172)
chr8 (346-384)||(42991176-42991214)
chr8 (109-150)||(33811108-33811149)
chr8 (328-377)||(35017850-35017899)
[»] chr7 (4 HSPs)
chr7 (68-197)||(37188902-37189031)
chr7 (79-140)||(32715057-32715118)
chr7 (79-140)||(32709835-32709896)
chr7 (79-140)||(32718435-32718496)
[»] chr6 (2 HSPs)
chr6 (76-140)||(10411404-10411468)
chr6 (76-140)||(10379762-10379826)
[»] chr4 (6 HSPs)
chr4 (82-198)||(53492975-53493091)
chr4 (82-197)||(53499268-53499383)
chr4 (108-181)||(53495378-53495451)
chr4 (90-176)||(53488672-53488758)
chr4 (109-179)||(53502408-53502478)
chr4 (82-197)||(52591013-52591128)
[»] chr2 (2 HSPs)
chr2 (85-176)||(16942656-16942747)
chr2 (85-176)||(17013321-17013412)
[»] chr1 (1 HSPs)
chr1 (109-150)||(47495928-47495969)


Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Original strand, 38213980 - 38214352
Alignment:
Q  11 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38213980 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 38214079  T
Q  111 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214080 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 38214179  T
Q  211 atccttattggggtgttgtcaaccaaaaatctgcatttagttacatgaacttgttagagtgtttgttatacacacataattgagttctttatacaaacac 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  38214180 atccttattggggtgttgtcaaccaaaaatctgcaattagttacatgaacttgttagcgtgtttgttataagcacataattgagttctttatacaaacac 38214279  T
Q  311 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214280 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggt 38214352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Original strand, 38218199 - 38218571
Alignment:
Q  11 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218199 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 38218298  T
Q  111 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218299 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 38218398  T
Q  211 atccttattggggtgttgtcaaccaaaaatctgcatttagttacatgaacttgttagagtgtttgttatacacacataattgagttctttatacaaacac 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  38218399 atccttattggggtgttgtcaaccaaaaatctgcaattagttacatgaacttgttagcgtgtttgttataagcacataattgagttctttatacaaacac 38218498  T
Q  311 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218499 gaacttaaatatatattacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggt 38218571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 42991523 - 42991291
Alignment:
Q  11 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 110  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42991523 cagagaaggaagtggaagagacag--gataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaacc 42991426  T
Q  111 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 210  Q
    |||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  42991425 acctcttgtagcccaatcttcagcgttccaaagacttgaatatattctcatcggttggttctttgggaaaggaatactaatagattcagcattcttgaag 42991326  T
Q  211 atccttattggggtgttgtcaaccaaaaatctgca 245  Q
    |||||||||||| ||||||||||||| ||||||||    
T  42991325 atccttattgggatgttgtcaaccaagaatctgca 42991291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 35018172 - 35017979
Alignment:
Q  52 ttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaat 151  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || || ||||    
T  35018172 ttgaaattacggtagtatgctgtaaagggtgctttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaat 35018073  T
Q  152 agattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaagatccttattggggtgttgtcaaccaaaaatctgca 245  Q
    ||||||||||||||||||||||||| || |||| |||||| |||||| |||||||||| | |||||||||  |||| |||||||| ||||||||    
T  35018072 agattctcattggttggttctttggaaaaggaacaccaatagattcaacattcttgaatacccttattggcatgttatcaaccaagaatctgca 35017979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 42991214 - 42991176
Alignment:
Q  346 ggcttccagatgatagagtaagtgtggaagttcttggtg 384  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42991214 ggcttccagatgatagagtaagtgtggaagttcttggtg 42991176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 33811108 - 33811149
Alignment:
Q  109 ccacctcttgtagcccaatcatcagcattccagagacttgaa 150  Q
    ||||||||||||||||||||||| |||||||| | |||||||    
T  33811108 ccacctcttgtagcccaatcatctgcattccatacacttgaa 33811149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 35017899 - 35017850
Alignment:
Q  328 acttacataatgtgttgtggcttccagatgatagagtaagtgtggaagtt 377  Q
    |||||||| |||||||| || ||||| ||||| |||||||||||||||||    
T  35017899 acttacatgatgtgttggggtttccaaatgatggagtaagtgtggaagtt 35017850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 37189031 - 37188902
Alignment:
Q  68 aagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttg 167  Q
    |||| ||||| || || ||||||||||| || || || |  |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  37189031 aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattccaaagactagaatagattctcattggttg 37188932  T
Q  168 gttctttgggaatggaataccaattgattc 197  Q
    | | || |||||||||| |||| |||||||    
T  37188931 gcttttggggaatggaacaccatttgattc 37188902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 32715118 - 32715057
Alignment:
Q  79 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 140  Q
    |||||||| |||||||| |||||| |||||||||||||||| ||||||||||| ||||||||    
T  32715118 ggtgcttttgaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 32715057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 32709896 - 32709835
Alignment:
Q  79 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 140  Q
    ||||||||||||||||| |||||| | || ||||||||||| ||||||||||| ||||||||    
T  32709896 ggtgctttggaccaatctgttttctctaatccacctcttgttgcccaatcatctgcattcca 32709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 32718496 - 32718435
Alignment:
Q  79 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 140  Q
    |||||||| ||||||||||||||  | || ||||| ||||| ||||||||||| ||||||||    
T  32718496 ggtgcttttgaccaatcagttttttctaatccaccccttgtggcccaatcatctgcattcca 32718435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 10411468 - 10411404
Alignment:
Q  76 aagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 140  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  10411468 aagggtgctttggaccaatctgttttctccaaaccaccccttgtagcccaatcatcagcattcca 10411404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 10379762 - 10379826
Alignment:
Q  76 aagggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattcca 140  Q
    |||||||||||||||||||| |||||| | |||||||| ||||| ||||||||||||||||||||    
T  10379762 aagggtgctttggaccaatctgttttctctaaaccaccccttgtggcccaatcatcagcattcca 10379826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 53493091 - 53492975
Alignment:
Q  82 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 181  Q
    |||||||||||||| || || || |  || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| || |||||||    
T  53493091 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 53492992  T
Q  182 gaataccaattgattca 198  Q
    |||  ||| ||||||||    
T  53492991 gaacgccacttgattca 53492975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 53499383 - 53499268
Alignment:
Q  82 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 181  Q
    |||||||||||||| || || || |  || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| || |||||||    
T  53499383 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 53499284  T
Q  182 gaataccaattgattc 197  Q
    | | |||| |||||||    
T  53499283 gtacaccatttgattc 53499268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 53495451 - 53495378
Alignment:
Q  108 accacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 181  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||    
T  53495451 accacctcttgttgcccaatcatcagcattccatagacttgaatatatcctcattggttgattctttggaaatg 53495378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 53488672 - 53488758
Alignment:
Q  90 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 176  Q
    |||||| |||||||| | |||||||||||| ||||||||||| |||||||| ||||||||||| | ||||||||| || ||||||||    
T  53488672 ccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagacttgaatataatctcattggctgcttctttgg 53488758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 53502478 - 53502408
Alignment:
Q  109 ccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaa 179  Q
    ||||||||||| ||||| | ||| |||||||| | ||||||||| ||||||||||||||||||||||||||    
T  53502478 ccacctcttgttgcccagttatctgcattccacaaacttgaatatattctcattggttggttctttgggaa 53502408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 52591128 - 52591013
Alignment:
Q  82 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 181  Q
    |||| |||||||||||||||| | | ||| || ||||| ||||||| ||| |||| ||| ||||||||||| || ||||||| |||| | || || || |    
T  52591128 gcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaatatatactcattgcttggcttttaggaaaag 52591029  T
Q  182 gaataccaattgattc 197  Q
    |||||||  |||||||    
T  52591028 gaataccttttgattc 52591013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 16942747 - 16942656
Alignment:
Q  85 ttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 176  Q
    |||| |||||| |||||||| |  |||||||| || ||||||| ||| |||||||| ||||||||||| || ||||| | ||||||||||||    
T  16942747 ttggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttgg 16942656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 17013412 - 17013321
Alignment:
Q  85 ttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgg 176  Q
    |||| |||||| |||||||| |  |||||||| || ||||||| ||| |||||||| ||||||||||| || ||||| | ||||||||||||    
T  17013412 ttggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttgg 17013321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 47495969 - 47495928
Alignment:
Q  109 ccacctcttgtagcccaatcatcagcattccagagacttgaa 150  Q
    ||||||||||||||||||||||| |||||||| | |||||||    
T  47495969 ccacctcttgtagcccaatcatctgcattccatacacttgaa 47495928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University