View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_32 (Length: 397)
Name: NF1783_low_32
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 85 - 353
Target Start/End: Original strand, 47949087 - 47949368
Alignment:
| Q |
85 |
tattgttgaagggagttggtctaaatatactattctttttgaactttttaagattgcttatctgagctttggtccct------attactacttggtgata |
178 |
Q |
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| T |
47949087 |
tattgttgaagggagttggtctaaatatactattctttttgaaatttttaagattgcttatctgagctgtggtccctctacttattactacttggtgata |
47949186 |
T |
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| Q |
179 |
gcacaaaatgcgggatcatgtgggttgtcactatcttctgggggaaaattgagaacacatggtagttattatttatcaaggaaaaggaaaatgccctcgt |
278 |
Q |
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| T |
47949187 |
gcacaaaatgcggggtcatgtgggttgtcattatcttctgggggaaaattgagaacacatggtag---ttatttatcaaggaaaaggaaaatgccctcgt |
47949283 |
T |
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| Q |
279 |
tgttgatatgcaggttttggtccagc----------tatataggaaaatttcagagctgactgctggaggcatgaattaataaat |
353 |
Q |
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| T |
47949284 |
tgttggtatgcaggttttggtccagctatatatctatatataggaaaatttcagagctgactgctggaggtatgaattaataaat |
47949368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 47948853 - 47948939
Alignment:
| Q |
1 |
tggtgtgaatgtgaatatgtgattaaactaaactccagttgccgttatagtttttt-ctgacagaaattgtttttgagaattttata |
86 |
Q |
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| T |
47948853 |
tggtgtgaatgtgaatatgtgattaaactaaactccagttgccgttatagttttttcctgaaagaaattgtttttgagaattttata |
47948939 |
T |
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