View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_33 (Length: 388)

Name: NF1783_low_33
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_33
NF1783_low_33
[»] chr2 (21 HSPs)
chr2 (1-375)||(24157853-24158228)
chr2 (206-375)||(21846170-21846338)
chr2 (177-346)||(22383522-22383691)
chr2 (31-375)||(24440494-24440809)
chr2 (188-375)||(20568158-20568344)
chr2 (268-375)||(21911045-21911151)
chr2 (36-157)||(21846335-21846457)
chr2 (303-375)||(25918666-25918738)
chr2 (30-98)||(20569763-20569831)
chr2 (220-331)||(10896354-10896465)
chr2 (265-330)||(14793966-14794031)
chr2 (264-341)||(19320376-19320453)
chr2 (30-87)||(24302684-24302741)
chr2 (295-341)||(19643685-19643731)
chr2 (230-331)||(24302898-24302998)
chr2 (255-327)||(24844204-24844276)
chr2 (288-335)||(33706002-33706049)
chr2 (288-369)||(15668545-15668626)
chr2 (284-334)||(22683493-22683543)
chr2 (49-97)||(25918912-25918958)
chr2 (30-98)||(10896176-10896244)
[»] chr7 (10 HSPs)
chr7 (1-375)||(16307490-16307861)
chr7 (30-375)||(9063973-9064308)
chr7 (218-375)||(13172329-13172485)
chr7 (233-375)||(18047827-18047968)
chr7 (264-375)||(18361605-18361715)
chr7 (280-352)||(16105033-16105105)
chr7 (222-347)||(7487887-7488011)
chr7 (263-369)||(5035405-5035510)
chr7 (266-340)||(16472739-16472813)
chr7 (255-331)||(16412061-16412138)
[»] chr5 (18 HSPs)
chr5 (1-375)||(26119569-26119942)
chr5 (26-375)||(23589737-23590098)
chr5 (130-375)||(20969221-20969464)
chr5 (199-368)||(13692450-13692617)
chr5 (218-375)||(20567826-20567982)
chr5 (202-375)||(31588958-31589130)
chr5 (230-375)||(27057339-27057483)
chr5 (279-375)||(17262755-17262851)
chr5 (269-352)||(22586013-22586096)
chr5 (269-340)||(34637574-34637645)
chr5 (232-375)||(39798857-39798999)
chr5 (275-375)||(34638472-34638571)
chr5 (222-331)||(2152871-2152980)
chr5 (279-339)||(20237405-20237465)
chr5 (27-98)||(13692679-13692748)
chr5 (27-74)||(20969511-20969558)
chr5 (31-98)||(27057573-27057638)
chr5 (297-341)||(27276184-27276228)
[»] chr1 (18 HSPs)
chr1 (1-375)||(16869990-16870360)
chr1 (101-375)||(9346782-9347052)
chr1 (130-375)||(18516978-18517223)
chr1 (26-375)||(18129742-18130072)
chr1 (155-375)||(26279894-26280112)
chr1 (218-375)||(23054394-23054550)
chr1 (288-369)||(21683160-21683240)
chr1 (264-368)||(1090485-1090590)
chr1 (24-99)||(9658974-9659049)
chr1 (229-331)||(20909478-20909579)
chr1 (287-375)||(20109913-20110000)
chr1 (264-332)||(16478671-16478739)
chr1 (296-352)||(26703605-26703661)
chr1 (36-98)||(24227698-24227759)
chr1 (36-98)||(20109684-20109746)
chr1 (287-331)||(2819292-2819336)
chr1 (137-173)||(20109808-20109844)
chr1 (26-98)||(23054629-23054701)
[»] chr8 (13 HSPs)
chr8 (1-374)||(17916582-17916953)
chr8 (138-352)||(12193945-12194158)
chr8 (138-352)||(12438373-12438586)
chr8 (218-375)||(18558041-18558197)
chr8 (269-325)||(12541699-12541755)
chr8 (269-375)||(19505467-19505572)
chr8 (260-331)||(18772685-18772755)
chr8 (29-98)||(12194171-12194238)
chr8 (29-98)||(12438599-12438666)
chr8 (36-98)||(23772669-23772730)
chr8 (323-375)||(1209838-1209890)
chr8 (26-98)||(26833350-26833422)
chr8 (152-209)||(26833224-26833281)
[»] scaffold0522 (2 HSPs)
scaffold0522 (28-375)||(11287-11633)
scaffold0522 (28-375)||(4004-4350)
[»] scaffold0772 (1 HSPs)
scaffold0772 (26-375)||(628-963)
[»] chr4 (16 HSPs)
chr4 (53-369)||(13027806-13028121)
chr4 (26-367)||(16324261-16324598)
chr4 (101-352)||(14356949-14357200)
chr4 (218-375)||(20570934-20571090)
chr4 (222-375)||(14902400-14902549)
chr4 (205-375)||(2651820-2651989)
chr4 (234-375)||(18774069-18774209)
chr4 (26-163)||(19888879-19889012)
chr4 (255-333)||(10249877-10249955)
chr4 (269-375)||(20577305-20577411)
chr4 (27-98)||(14902232-14902301)
chr4 (269-333)||(17812280-17812344)
chr4 (26-148)||(21350358-21350477)
chr4 (310-375)||(19889020-19889084)
chr4 (154-202)||(21350469-21350517)
chr4 (287-375)||(18394553-18394643)
[»] scaffold0364 (1 HSPs)
scaffold0364 (99-375)||(10213-10489)
[»] chr3 (41 HSPs)
chr3 (124-374)||(8728878-8729127)
chr3 (124-374)||(9080765-9081014)
chr3 (29-375)||(16882315-16882661)
chr3 (155-375)||(16794197-16794414)
chr3 (171-369)||(20418264-20418461)
chr3 (130-341)||(27374832-27375048)
chr3 (26-281)||(7494387-7494641)
chr3 (171-375)||(22766464-22766663)
chr3 (222-375)||(4243151-4243302)
chr3 (264-375)||(21317417-21317527)
chr3 (154-281)||(7477696-7477823)
chr3 (230-334)||(19197865-19197969)
chr3 (230-352)||(14007620-14007741)
chr3 (297-375)||(14077405-14077482)
chr3 (26-99)||(8728804-8728877)
chr3 (26-99)||(9080691-9080764)
chr3 (218-334)||(17697676-17697792)
chr3 (220-375)||(10851835-10851989)
chr3 (235-352)||(14072739-14072855)
chr3 (270-369)||(11078679-11078778)
chr3 (264-347)||(3087590-3087673)
chr3 (130-375)||(13653942-13654185)
chr3 (287-352)||(315133-315198)
chr3 (32-175)||(4242990-4243143)
chr3 (269-352)||(16305188-16305271)
chr3 (44-121)||(7477825-7477901)
chr3 (287-375)||(13699384-13699471)
chr3 (26-121)||(50721991-50722084)
chr3 (26-121)||(50790765-50790858)
chr3 (36-99)||(19197656-19197719)
chr3 (26-98)||(20418478-20418548)
chr3 (30-98)||(10852067-10852135)
chr3 (138-194)||(12397262-12397318)
chr3 (137-173)||(14077295-14077331)
chr3 (269-333)||(27851611-27851675)
chr3 (32-98)||(13699603-13699667)
chr3 (32-97)||(16304997-16305060)
chr3 (30-87)||(14073004-14073061)
chr3 (287-336)||(15647814-15647863)
chr3 (265-334)||(17762125-17762194)
chr3 (265-334)||(19063445-19063514)
[»] scaffold0490 (1 HSPs)
scaffold0490 (26-350)||(7375-7699)
[»] chr6 (35 HSPs)
chr6 (26-375)||(18171800-18172154)
chr6 (26-375)||(23005822-23006177)
chr6 (26-375)||(23782189-23782544)
chr6 (154-369)||(24718642-24718857)
chr6 (154-375)||(24728465-24728676)
chr6 (154-375)||(10704462-10704671)
chr6 (101-375)||(13145159-13145433)
chr6 (138-375)||(16462537-16462771)
chr6 (26-187)||(9192698-9192868)
chr6 (222-375)||(19875861-19876013)
chr6 (188-342)||(17445593-17445747)
chr6 (222-375)||(24398686-24398838)
chr6 (140-367)||(23231218-23231443)
chr6 (222-375)||(32335848-32336000)
chr6 (154-290)||(14325276-14325413)
chr6 (154-290)||(14418286-14418423)
chr6 (230-375)||(21035023-21035167)
chr6 (26-99)||(24718535-24718608)
chr6 (26-99)||(24728334-24728407)
chr6 (305-369)||(17867598-17867661)
chr6 (305-369)||(17877381-17877444)
chr6 (279-341)||(18026792-18026854)
chr6 (255-331)||(25930546-25930622)
chr6 (290-358)||(26185756-26185823)
chr6 (27-98)||(17445472-17445544)
chr6 (279-351)||(31127368-31127440)
chr6 (260-331)||(19625881-19625951)
chr6 (36-87)||(23298261-23298311)
chr6 (36-86)||(16462430-16462480)
chr6 (275-368)||(30451557-30451650)
chr6 (30-87)||(12348436-12348493)
chr6 (36-97)||(25930744-25930805)
chr6 (30-98)||(32336081-32336147)
chr6 (30-98)||(7812304-7812372)
chr6 (138-174)||(32336029-32336065)
[»] scaffold0311 (1 HSPs)
scaffold0311 (186-375)||(20095-20283)
[»] scaffold1026 (2 HSPs)
scaffold1026 (154-375)||(2994-3215)
scaffold1026 (6-64)||(3280-3338)
[»] scaffold0011 (1 HSPs)
scaffold0011 (222-363)||(59597-59736)
[»] scaffold0074 (1 HSPs)
scaffold0074 (222-375)||(31651-31803)
[»] scaffold0622 (2 HSPs)
scaffold0622 (220-375)||(3332-3486)
scaffold0622 (280-331)||(2730-2781)
[»] scaffold0758 (2 HSPs)
scaffold0758 (280-375)||(4296-4391)
scaffold0758 (34-97)||(4548-4609)
[»] scaffold0683 (1 HSPs)
scaffold0683 (280-346)||(431-497)
[»] scaffold1107 (1 HSPs)
scaffold1107 (288-341)||(2357-2410)
[»] scaffold0388 (1 HSPs)
scaffold0388 (26-98)||(4720-4792)
[»] scaffold0037 (1 HSPs)
scaffold0037 (218-285)||(87021-87088)
[»] scaffold0351 (2 HSPs)
scaffold0351 (280-368)||(9245-9329)
scaffold0351 (32-97)||(9045-9108)
[»] scaffold0002 (1 HSPs)
scaffold0002 (280-368)||(112241-112325)
[»] scaffold0916 (1 HSPs)
scaffold0916 (26-87)||(2375-2436)
[»] scaffold0067 (1 HSPs)
scaffold0067 (288-341)||(16417-16470)
[»] scaffold0043 (1 HSPs)
scaffold0043 (280-352)||(1827-1899)
[»] scaffold0003 (2 HSPs)
scaffold0003 (269-343)||(416028-416102)
scaffold0003 (255-331)||(773-850)
[»] scaffold0498 (1 HSPs)
scaffold0498 (287-335)||(3302-3350)
[»] scaffold0092 (1 HSPs)
scaffold0092 (288-336)||(8150-8198)
[»] scaffold0040 (1 HSPs)
scaffold0040 (291-375)||(4022-4105)
[»] scaffold0035 (1 HSPs)
scaffold0035 (260-331)||(29867-29937)
[»] scaffold0201 (1 HSPs)
scaffold0201 (137-173)||(19236-19272)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 24158228 - 24157853
Alignment:
Q  1 tgtgcaggaccatagtcaaaaattataattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24158228 tgtgcaggaccatagtaaaaaattataattcaagtataggttctgaaagaacaaatgagagcaatgaaatttacgaaaaggaaacttattttgcaagatt 24158129  T
Q  101 caagacagattttgaagacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggag 200  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||    
T  24158128 caagacagagcctgaagacaaagagcgtttgaagactatcagaagctgtctactagaagctgacgtcatcagagaatctgaagaacctcaaaagctggag 24158029  T
Q  201 ttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactatt 300  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  24158028 ttcatcagagtctgaagactggaagctgaagttagttaaaagttgttattctgaatgcatatcattgtagaaggaatggaagcctggagcaacgactatt 24157929  T
Q  301 ttagaggaattagaagacattggatgcttatccactaaagagcgcagg-aaaaaggacatagtacaattgcacaac 375  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||    
T  24157928 ttagaggaattagaagacattggatgcttatccactgaagagcgtaggaaaaaaggatatagtacaattgcacaac 24157853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 206 - 375
Target Start/End: Complemental strand, 21846338 - 21846170
Alignment:
Q  206 cagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttaga 305  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| | |    
T  21846338 cagagtctgaagactggaagctgaagttagttaaaagttgttattctgaatgcatatcattgcagaaggaatggaagcctagagcaacgactatttcaaa 21846239  T
Q  306 ggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||||||| |||| ||||| |||||||| || |||||| | |||||||||||||||||||| |||||    
T  21846238 ggaattagaaggcatttgatgcatatccacttaaaagcgcaag-aaaaggacatagtacaattgtacaac 21846170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 177 - 346
Target Start/End: Complemental strand, 22383691 - 22383522
Alignment:
Q  177 tctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaa 276  Q
    |||||||| | ||||||| |  || ||| ||||||| |||  ||| |||||  ||||||||||||||||||||||| ||  |||||||||||||||| ||    
T  22383691 tctgaagatcatcagaagctaaaggtcaacagagtctgaaggctgcaagctagagttagttaaaagttgttattctgaagacatatcattgtagaaggaa 22383592  T
Q  277 tggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgca 346  Q
    ||||||||  |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22383591 tggaagccgtgagcaacggctattttagaggaattagaaggcattggatgcttatccactaaagagcgca 22383522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 375
Target Start/End: Original strand, 24440494 - 24440809
Alignment:
Q  31 caagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagagcgttt 130  Q
    ||||||||||||||  | ||||||| |||||||||| ||||||| |||||||||||| | |||||||||       ||| |  ||||| | ||||||| |    
T  24440494 caagtataggttctagaagaacaaacgagagcaatggaatttacaaaaaggaagcttgtgttgcaagat-------agagtcagaaga-agagagcgtct 24440585  T
Q  131 gaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaa 230  Q
    |||||| ||||||||||||||||||||||||||||||||||||                   || ||||||||||||||||| ||| ||| |||  ||||    
T  24440586 gaagaccatcagaagctgtctaccagaagctgacgtcatcaga-------------------agatggagttcatcagagtctgaagactagaacatgaa 24440666  T
Q  231 gttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgctta 330  Q
    ||| |||| ||||||||| ||| ||  | ||| |||| ||||| ||| ||||||| |||||||  |||||| |||||||||||||| ||||||||| |||    
T  24440667 gtttgttagaagttgttaatctgaacacgtatgattgcagaaggaatagaagcctggagcaactgctatttcagaggaattagaaggcattggatgttta 24440766  T
Q  331 tccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||||| |||||||||   |||||||||||||||||||| |||||    
T  24440767 tccactgaagagcgca--taaaaggacatagtacaattgtacaac 24440809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 375
Target Start/End: Complemental strand, 20568344 - 20568158
Alignment:
Q  188 tcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctag 287  Q
    ||||||| || || |||||||| || ||| ||||||||||||||||||||||| ||||| ||| | | |||| ||||||||||||| ||| ||||||| |    
T  20568344 tcagaaggtgaagatcatcagaatctgaagactggaagctgaagttagttaaatgttgtcatt-tgattgcacatcattgtagaaggaatagaagcctgg 20568246  T
Q  288 agcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggac-atagtacaattgcacaac 375  Q
    ||||||| |||||||| |||||||||||| |||||||||||||||| |||||||||  | | |||||||| |||||||||||| |||||    
T  20568245 agcaacggctattttataggaattagaaggcattggatgcttatccgctaaagagc-aatggaaaaggacaatagtacaattgtacaac 20568158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 268 - 375
Target Start/End: Original strand, 21911045 - 21911151
Alignment:
Q  268 tagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaat 367  Q
    |||||| ||| ||||||| |||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||    
T  21911045 tagaaggaatagaagcctggagcaacgacgattttagagaaattagaaggcatttgatgcttatccactaaagagtgcagg-aaaaggacatagtacaat 21911143  T
Q  368 tgcacaac 375  Q
    || |||||    
T  21911144 tgtacaac 21911151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 21846457 - 21846335
Alignment:
Q  36 ataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagagcgtttgaag- 134  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||||||||||   || | |||||||||||| | | |||||||||||||||| |||||     
T  21846457 ataggttctgaaagaacaaatgagagcaataaaatttacaaaaaggaagcttgagtttctagattcaagacatagtctgaagacaaagagcgtctgaaga 21846358  T
Q  135 actatcagaagctgtctaccaga 157  Q
    ||||||| |||||||||||||||    
T  21846357 actatcaaaagctgtctaccaga 21846335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 25918738 - 25918666
Alignment:
Q  303 agaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggac-atagtacaattgcacaac 375  Q
    |||||||||||||| ||||||||||||||||||||||||||||| | | |||||| |||||||||||| |||||    
T  25918738 agaggaattagaaggcattggatgcttatccactaaagagcgca-gtagaaggacaatagtacaattgtacaac 25918666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 20569831 - 20569763
Alignment:
Q  30 tcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||| |||||||||| | |||||||||||||||||| ||| ||| |||||||||||||| ||||||||    
T  20569831 tcaagcataggttctggaagaacaaatgagagcaatggaatctacaaaaaggaagcttatgttgcaaga 20569763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 331
Target Start/End: Original strand, 10896354 - 10896465
Alignment:
Q  220 tggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagaca 319  Q
    |||||| |||||||||||||||| |||  || | | | || ||||||||||||  ||| ||| ||| |||||||| |||||| ||| |||||||||| ||    
T  10896354 tggaagttgaagttagttaaaagctgtctttttgattacacatcattgtagaaagaatagaatcctggagcaacggctatttcagaagaattagaaggca 10896453  T
Q  320 ttggatgcttat 331  Q
    ||||||||||||    
T  10896454 ttggatgcttat 10896465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 14793966 - 14794031
Alignment:
Q  265 ttgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgctta 330  Q
    ||||||||| ||  ||||||| ||||||||||||||| |||||||||| ||||||||| |||||||    
T  14793966 ttgtagaaggaacagaagcctggagcaacgactatttcagaggaattataagacattgcatgctta 14794031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 19320376 - 19320453
Alignment:
Q  264 attgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaaga 341  Q
    |||| ||||| ||| |||| ||||||||||  |||||| |||||||||||||| |||||||||||||| |||| ||||    
T  19320376 attgcagaaggaatagaaggctagagcaacagctatttcagaggaattagaaggcattggatgcttatacactgaaga 19320453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 24302684 - 24302741
Alignment:
Q  30 tcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagctt 87  Q
    ||||| |||||||||| | |||||||||||||||||||||||||| |||||| |||||    
T  24302684 tcaagaataggttctggaagaacaaatgagagcaatgaaatttacaaaaagggagctt 24302741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 19643685 - 19643731
Alignment:
Q  295 actattttagaggaattagaagacattggatgcttatccactaaaga 341  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||    
T  19643685 actattttagaggaattagaaggcattggatgcttgtccactgaaga 19643731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 331
Target Start/End: Original strand, 24302898 - 24302998
Alignment:
Q  230 agttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgctt 329  Q
    |||| |||||| ||||||||||| | ||| ||| |||| ||||| ||||||||||  |||||||  ||| |||||||||||| |||| ||| ||||||||    
T  24302898 agtttgttaaatgttgttattctca-tgcctatgattgcagaaggaatggaagccaggagcaaccgctaatttagaggaatttgaaggcatgggatgctt 24302996  T
Q  330 at 331  Q
    ||    
T  24302997 at 24302998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 24844276 - 24844204
Alignment:
Q  255 atgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgc 327  Q
    |||| |||||||| ||||  ||| ||||||| ||||||||||||||| |||||| || |||| ||||||||||    
T  24844276 atgcctatcattgcagaaagaatagaagcctggagcaacgactatttcagaggagttggaaggcattggatgc 24844204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 33706002 - 33706049
Alignment:
Q  288 agcaacgactattttagaggaattagaagacattggatgcttatccac 335  Q
    |||||||||||||| |||| ||||||||| | ||||||||||||||||    
T  33706002 agcaacgactatttcagagaaattagaaggctttggatgcttatccac 33706049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 369
Target Start/End: Original strand, 15668545 - 15668626
Alignment:
Q  288 agcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggac-atagtacaattg 369  Q
    ||||||| |||||| ||| |||||| ||| ||||||||||||||||||| |||| || | |||| ||||| ||||||||||||    
T  15668545 agcaacggctatttcagatgaattaaaaggcattggatgcttatccactgaagaccg-aagaaataggacaatagtacaattg 15668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 22683543 - 22683493
Alignment:
Q  284 ctagagcaacgactattttagaggaattagaagacattggatgcttatcca 334  Q
    |||||||||||||||||| | ||||| |||||| ||||| |||||||||||    
T  22683543 ctagagcaacgactatttcaaaggaaatagaaggcattgaatgcttatcca 22683493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 25918958 - 25918912
Alignment:
Q  49 gaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaag 97  Q
    |||||||||||||||||| |||||||  ||||||||||||| |||||||    
T  25918958 gaacaaatgagagcaatggaatttac--aaaggaagcttatgttgcaag 25918912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 10896176 - 10896244
Alignment:
Q  30 tcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||| |||||||||| | ||||||||||||||||| |||  ||| ||| |||||||| | ||||||||    
T  10896176 tcaagcataggttctggaggaacaaatgagagcaataaaaactacaaaagggaagcttgtgttgcaaga 10896244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 16307490 - 16307861
Alignment:
Q  1 tgtgcaggaccatagtcaaaaattataattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagatt 100  Q
    |||||||||||||||||||||||||||  |||||||| ||||||| | |||||||||||||||||| |||||||  ||||||||||| | ||||||||||    
T  16307490 tgtgcaggaccatagtcaaaaattatatgtcaagtattggttctggaagaacaaatgagagcaatggaatttac--aaaggaagcttgtgttgcaagatt 16307587  T
Q  101 caagacagattttgaagacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggag 200  Q
     |||||||| | |||||||||||||||||||||||| |||||||| || |||||| ||| ||||||||||| ||| ||| |||||||||||||| |||||    
T  16307588 gaagacagagtctgaagacaaagagcgtttgaagaccatcagaagatgactaccaaaagttgacgtcatcatagagtctaaagaacctcagaagctggag 16307687  T
Q  201 ttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactatt 300  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||| ||||||||||||||    
T  16307688 ttcatcagagtctgaaaactggaagctggagttagttaaaagttgttattctgaatgtatatcattatagaaggaatggaagcctggagcaacgactatt 16307787  T
Q  301 ttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||| |||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||    
T  16307788 ttagatgaattagaaggcattggatgcttatccactgaagagcacagg-aaaaggacatagtacaattgtacaac 16307861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 30 - 375
Target Start/End: Original strand, 9063973 - 9064308
Alignment:
Q  30 tcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagagcgtt 129  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||| |||  ||||||||| ||||||||       |||| | |||||||||||||  |     
T  9063973 tcaagtattggttctgaaagaacaaatgagagctatgaaatttacaaaa--gaagcttatgttgcaaga-------cagagtatgaagacaaagagattc 9064063  T
Q  130 tgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctga 229  Q
    | ||||| |||||||||||  | | ||||||||| ||||||||||| |||||||| ||| ||||| |||||||||||| |||| ||| |||| ||||||     
T  9064064 taaagaccatcagaagctgaatgcaagaagctgatgtcatcagagagtctgaagagccttagaagctggagttcatcatagtctgaagactgaaagctgg 9064163  T
Q  230 agttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgctt 329  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||  ||||||||||||| ||||| ||||||    
T  9064164 agttagttaaaagttgttattctgaattcatatcattgtagaaggaatggaagcctggagcaacgactatttatgaggaattagaaggcattgaatgctt 9064263  T
Q  330 atccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||| ||||||||| ||||||| |||||||||||||| |||||    
T  9064264 atccactgaagagcgca-gaaaaagaacatagtacaattgtacaac 9064308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 218 - 375
Target Start/End: Original strand, 13172329 - 13172485
Alignment:
Q  218 actggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaaga 317  Q
    |||| |||||||||||||||||| ||||||||| |||||||| ||||||||| ||| | | ||||||| ||||||||||||||| |||| |||||||||     
T  13172329 actgaaagctgaagttagttaaatgttgttatttttaatgcacatcattgtaaaaggagtagaagcctggagcaacgactatttcagagtaattagaagg 13172428  T
Q  318 cattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||||||||||||||||||  ||| |||| | ||| |||||||||||||||| |||||    
T  13172429 cattggatgcttatccacttgagatcgcatg-aaatggacatagtacaattgtacaac 13172485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 233 - 375
Target Start/End: Original strand, 18047827 - 18047968
Alignment:
Q  233 tagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatc 332  Q
    |||||||| ||||||||||| ||  || ||||||||||||| |||  ||||||||||||| |  ||||| |||||||||||||| ||||| |||||||||    
T  18047827 tagttaaaggttgttattctgaagacacatcattgtagaaggaataaaagcctagagcaatggatatttcagaggaattagaaggcattgaatgcttatc 18047926  T
Q  333 cactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    | || ||||||||| | ||||| |||||||||||||| |||||    
T  18047927 ctctgaagagcgcaag-aaaagaacatagtacaattgtacaac 18047968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 375
Target Start/End: Original strand, 18361605 - 18361715
Alignment:
Q  264 attgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggac-atagt 362  Q
    |||||||||| ||| ||||| |  |||||| ||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||  ||||||| |||||    
T  18361605 attgtagaaggaatagaagcttgaagcaacaactatttcagaggaattagaaggcattagatgcttatccactaaaaagcgcagg--aaaggacaatagt 18361702  T
Q  363 acaattgcacaac 375  Q
    ||||||| |||||    
T  18361703 acaattgtacaac 18361715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 16105033 - 16105105
Alignment:
Q  280 aagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaa 352  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||||| |||||    
T  16105033 aagcctggagcaacgactattttataggaattagaaggcattggatgcttatccattgaagagcgcaagaaaa 16105105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 347
Target Start/End: Original strand, 7487887 - 7488011
Alignment:
Q  222 gaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacatt 321  Q
    ||||||||||||||||||| ||||| ||||  | ||  |||||||||||||| |||  || ||| |||||| ||||| || |||||| || |||| ||||    
T  7487887 gaagctgaagttagttaaatgttgtcattcagattgtgtatcattgtagaaggaataaaa-cctggagcaatgactaattcagaggattttgaaggcatt 7487985  T
Q  322 ggatgcttatccactaaagagcgcag 347  Q
    ||||||||||||||| ||||||||||    
T  7487986 ggatgcttatccactgaagagcgcag 7488011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 369
Target Start/End: Complemental strand, 5035510 - 5035405
Alignment:
Q  263 cattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagt 362  Q
    ||||| ||||| |||  |||||| || ||||| |||||| |||  ||||||||| ||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  5035510 cattgcagaaggaataaaagcctggaacaacgcctatttcagataaattagaaggcattggatgcttatccactgaagagcgtagg-aaaatgacatagt 5035412  T
Q  363 acaattg 369  Q
    |||||||    
T  5035411 acaattg 5035405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 16472813 - 16472739
Alignment:
Q  266 tgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaag 340  Q
    |||| ||| ||| |||| || ||| ||||||| ||| | ||| |||||||| |||||||||||||||||||||||    
T  16472813 tgtataaggaatagaagactggagtaacgactttttcaaaggcattagaaggcattggatgcttatccactaaag 16472739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 16412138 - 16412061
Alignment:
Q  255 atgcatatcattgtagaagaaatg-gaagcctagagcaacgactattttagaggaattagaagacattggatgcttat 331  Q
    |||| |||||||| ||||| |||  ||||||| ||||||||||||||| |||| ||||  ||| ||||||||||||||    
T  16412138 atgcctatcattgcagaaggaataagaagcctggagcaacgactatttcagagaaattgaaaggcattggatgcttat 16412061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 26119569 - 26119942
Alignment:
Q  1 tgtgcaggaccatagtcaaaaattataattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagatt 100  Q
    ||||||||||  |||||||||||||||| ||||||||  ||||| || |||||||||||| ||||||||||||| |||||||||||| | ||||||||||    
T  26119569 tgtgcaggacactagtcaaaaattataagtcaagtattagttcttaaagaacaaatgagaacaatgaaatttacaaaaaggaagcttgtgttgcaagatt 26119668  T
Q  101 caagacagattttgaagacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggag 200  Q
    ||||||||| | | ||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||     
T  26119669 caagacagagtctaaagacaaagagcgtcagaagaccatcagaagttgtctaccagaagctgacgtcatcagagagtctgaagagcctcaaaagctggat 26119768  T
Q  201 ttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactatt 300  Q
    ||||||| |||| ||||||||||||||||||||||||||  ||||||||| | |||||||||||||| | ||| ||||||||||| ||||||||||||||    
T  26119769 ttcatcatagtctgaaaactggaagctgaagttagttaactgttgttattttgaatgcatatcattgcaaaaggaatggaagcctggagcaacgactatt 26119868  T
Q  301 ttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||    
T  26119869 ttagaggaattagaaggcattggatgcttatccactgaagagcgcaagaaaaa-gacatagtacaattgtacaac 26119942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 26 - 375
Target Start/End: Complemental strand, 23590098 - 23589737
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagag 125  Q
    |||| ||||| ||||||||  | ||||||||||||||| |||||||||| |||||||||||| | |||||||| | |||||||| | ||||| |||||||    
T  23590098 taatacaagtttaggttcttgaagaacaaatgagagca-tgaaatttacaaaaaggaagcttgtgttgcaagaatgaagacagagtctgaagtcaaagag 23590000  T
Q  126 cgtttgaaga---------------ctatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcaga 209  Q
    ||||||||||               ||||||||||| |||||| |||||  |||| ||||| |  |||| ||||||| | ||||||||||||| ||||||    
T  23589999 cgtttgaagaactatcaaaagctgtctatcagaagcggtctactagaagtagacgccatcaaa--atctaaagaaccataagaagttggagtttatcaga 23589902  T
Q  210 gtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaa 309  Q
      | ||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||| |||||| |||| ||||||||||||||| |||||||    
T  23589901 agctgaagactggaagctgaagttagttaaatgttgttattctgaatgcatatgattgcagaaggaatggatgcctggagcaacgactatttcagaggaa 23589802  T
Q  310 ttagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||| ||||||||| ||||||||||||||||  ||| |||||||||||||||||||| |||||    
T  23589801 ttagaaggcattggatggttatccactaaagagcatagg-aaaaggacatagtacaattgtacaac 23589737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 130 - 375
Target Start/End: Complemental strand, 20969464 - 20969221
Alignment:
Q  130 tgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctga 229  Q
    ||||||| || |||||||| || || |||| ||||||||||| ||  |||||||| ||||||||| || ||||| ||| |||| ||| |||||||||||     
T  20969464 tgaagaccattagaagctgactgcctgaagttgacgtcatca-agcgtctgaagatcctcagaagctgaagttcttcaaagtctgaagactggaagctgt 20969366  T
Q  230 agttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgctt 329  Q
    |||||||||||  |||||||| | ||  || |||| |||||||| ||| |||||||| | |||||||||||| |||||||||||||  ||||||||||||    
T  20969365 agttagttaaagcttgttattttgaagacacatcactgtagaaggaatagaagcctacatcaacgactatttaagaggaattagaaagcattggatgctt 20969266  T
Q  330 atccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||| ||||| ||||| ||| |||||||||||||||| |||||    
T  20969265 atccacttaagagtgcagg-aaagggacatagtacaattgtacaac 20969221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 199 - 368
Target Start/End: Complemental strand, 13692617 - 13692450
Alignment:
Q  199 agttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgacta 298  Q
    |||||||||||||| ||| |||| |||||| |||||||||||| |||||| | | ||   | ||||||| ||||| ||| ||||||| |||||| |||||    
T  13692617 agttcatcagagtctgaatactgaaagctgcagttagttaaaatttgttactatgaagatacatcattgcagaaggaatagaagcctcgagcaatgacta 13692518  T
Q  299 ttttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaatt 368  Q
    |||||||||||||||||||||||| ||||||||||||  |||||| |||  |||||||||||||||||||    
T  13692517 ttttagaggaattagaagacattgaatgcttatccacagaagagcacag--aaaaggacatagtacaatt 13692450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 218 - 375
Target Start/End: Complemental strand, 20567982 - 20567826
Alignment:
Q  218 actggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaaga 317  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||| |||| ||||| |||| || ||| |||||||||||| || ||||||||| ||||     
T  20567982 actggaagctgaagttagttaaatgttgttattct-aatgcttatgattgcagaaggaatgcaatcctggagcaacgactacttcagaggaatttgaagg 20567884  T
Q  318 cattggatgcttatccactaaagagcgcaggaaaaaggac-atagtacaattgcacaac 375  Q
    ||||||||||||||| ||| | ||||||  | |||||||| |||||||||||| |||||    
T  20567883 cattggatgcttatcgactgatgagcgctag-aaaaggacaatagtacaattgtacaac 20567826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 375
Target Start/End: Original strand, 31588958 - 31589130
Alignment:
Q  202 tcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattt 301  Q
    ||||||||||| ||| ||| |||| || ||||| |||||  |||||||||| ||  || ||||||| ||||| ||| ||||||| |||||||  ||| ||    
T  31588958 tcatcagagtctgaagactagaagttgcagttaattaaagtttgttattctgaagacacatcattgcagaaggaatagaagcctggagcaacagctaatt 31589057  T
Q  302 tagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
     |||||||||| ||| |||||||||| |||||||| |||| |||||| |||||||||||||||||||| |||||    
T  31589058 cagaggaattaaaaggcattggatgcgtatccactgaagaacgcagg-aaaaggacatagtacaattgtacaac 31589130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 230 - 375
Target Start/End: Complemental strand, 27057483 - 27057339
Alignment:
Q  230 agttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgctt 329  Q
    |||||||||||  |||||||||| ||  || ||||||| ||||| |||  ||| ||||||||| |||||||| |||||||||||||| |||||||||  |    
T  27057483 agttagttaaagtttgttattctgaagacacatcattgcagaaggaataaaagactagagcaatgactatttcagaggaattagaaggcattggatgact 27057384  T
Q  330 atccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||| |||||||||  |||||||||||| |||||||| |||||    
T  27057383 atccactgaagagcgca-aaaaaaggacataatacaattgtacaac 27057339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 17262755 - 17262851
Alignment:
Q  279 gaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggac-atagtacaattgcacaac 375  Q
    ||||||| |||||| |||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||  ||||||| |||||||||||| |||||    
T  17262755 gaagcctggagcaatgactatttcagaggaatgagaaggcattggatgcttatccactgaagagcgcagg-taaaggacaatagtacaattgtacaac 17262851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 22586013 - 22586096
Alignment:
Q  269 agaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaa 352  Q
    ||||| ||| ||||||| ||||||||||||||||||| || | ||||| ||||| ||||||||||||||||||||| |||||||    
T  22586013 agaaggaatagaagcctggagcaacgactattttagaagactaagaaggcattgaatgcttatccactaaagagcgtaggaaaa 22586096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 34637645 - 34637574
Alignment:
Q  269 agaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaag 340  Q
    ||||| ||| ||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  34637645 agaaggaatagaatcctagagcgacgactattttagaggaattaaaaggcattggatgcttatccactaaag 34637574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 39798857 - 39798999
Alignment:
Q  232 ttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttat 331  Q
    |||||||||  |||||||||| ||  || || |||| ||||| |||  ||| || ||||||||||||||| |||| ||||||||  ||||||||||||||    
T  39798857 ttagttaaagtttgttattctgaagacacataattgcagaaggaataaaaggctggagcaacgactatttcagagaaattagaaagcattggatgcttat 39798956  T
Q  332 ccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
     |||| ||||||||| ||||| ||||||||| |||||| |||||    
T  39798957 tcacttaagagcgca-gaaaagggacatagtgcaattgtacaac 39798999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 34638571 - 34638472
Alignment:
Q  275 aatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggac-atagtacaattgcaca 373  Q
    ||||||||||| |||||||| ||| || ||||||||| |||| ||||||||| ||||||||| ||||||||||  |||||||| ||||| |||||| |||    
T  34638571 aatggaagcctggagcaacggctaattcagaggaatttgaaggcattggatgtttatccactgaagagcgcag--aaaaggacaatagtgcaattgtaca 34638474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 2152871 - 2152980
Alignment:
Q  222 gaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacatt 321  Q
    ||||||||||||||||||| ||||| ||||| | ||   ||||| | ||||| ||| ||||||| ||||||| ||||||| ||| ||||| |||||||||    
T  2152871 gaagctgaagttagttaaatgttgtcattctaattgtgcatcatagcagaaggaatagaagcctggagcaacaactatttcagaagaattggaagacatt 2152970  T
Q  322 ggatgcttat 331  Q
    | ||||||||    
T  2152971 gaatgcttat 2152980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 20237405 - 20237465
Alignment:
Q  279 gaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaa 339  Q
    ||||||| ||||||||||||||| |||||||||||||| |||| ||||||||||| |||||    
T  20237405 gaagccttgagcaacgactatttcagaggaattagaaggcatttgatgcttatcctctaaa 20237465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 13692748 - 13692679
Alignment:
Q  27 aattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||||||||| ||||||||| ||||| | ||||||||||||||||||  ||||||| ||||| ||||||||    
T  13692748 aattcaagtattggttctgaaagaacataagagagcaatgaaatttac--aaaggaaacttatgttgcaaga 13692679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 20969558 - 20969511
Alignment:
Q  27 aattcaagtataggttctgaatgaacaaatgagagcaatgaaatttac 74  Q
    ||||||||||| | ||||||| |||||||||||||||||| |||||||    
T  20969558 aattcaagtattgtttctgaaagaacaaatgagagcaatggaatttac 20969511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 27057638 - 27057573
Alignment:
Q  31 caagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||||| |||| |||| ||||||| |||||||||||||||   | ||||||||||||| ||||||||    
T  27057638 caagtattggttttgaaggaacaaaagagagcaatgaaatt--agcaaaggaagcttatgttgcaaga 27057573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 27276184 - 27276228
Alignment:
Q  297 tattttagaggaattagaagacattggatgcttatccactaaaga 341  Q
    ||||| |||||||||||||| ||||| ||||||||||||| ||||    
T  27276184 tatttcagaggaattagaaggcattgaatgcttatccactgaaga 27276228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 16870360 - 16869990
Alignment:
Q  1 tgtgcaggaccatagtcaaaaattataattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagatt 100  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| | | ||||||||||    
T  16870360 tgtgcagaaccatagtcaaa--ttataattcaagtataggttctgaaagaacaaatgagagcaatgaaatttacaacaaggaagcgtgtgttgcaagatt 16870263  T
Q  101 caagacagattttgaagacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggag 200  Q
    ||||||||| | ||| |||||||||| | ||||||| |||| ||| ||||||| ||||| |||||||||||||  ||||||||||||||||||| |||||    
T  16870262 caagacagagtctgaggacaaagagcatctgaagaccatcaaaagttgtctactagaagttgacgtcatcaga--atctgaagaacctcagaagctggag 16870165  T
Q  201 ttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactatt 300  Q
    || ||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||  |||| |||||| ||||||   |||||    
T  16870164 tttatcagagtctgaagactggaagctgaagttagttaaaagttattattctgaatgcatatcattgcagaatgaatgaaagcctggagcaattgctatt 16870065  T
Q  301 ttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16870064 tcagaggaattagaaggcattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgtacaac 16869990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 101 - 375
Target Start/End: Complemental strand, 9347052 - 9346782
Alignment:
Q  101 caagacagattttgaagacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggag 200  Q
    ||||||||| | ||||| |||||||||| ||||||| ||||||||||| |||| ||||||||||||| ||||||| |||||||| |||| |||| || ||    
T  9347052 caagacagagtctgaagccaaagagcgtatgaagaccatcagaagctgactactagaagctgacgtcgtcagagagtctgaagagcctcggaagctgaag 9346953  T
Q  201 ttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactatt 300  Q
    |||| ||||||| ||| ||||||||||| | ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||||    
T  9346952 ttcaacagagtctgaagactggaagctggacttagttaaaagttgttattctgaattcatatcattgcagaagaaatggaagcctggagcaacgactatt 9346853  T
Q  301 ttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    | | |  ||||||||| |||||||||||||||||||||||||||||   ||||||||| |||||||||| |||||    
T  9346852 tcaaa--aattagaaggcattggatgcttatccactaaagagcgca--taaaaggacacagtacaattgtacaac 9346782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 130 - 375
Target Start/End: Original strand, 18516978 - 18517223
Alignment:
Q  130 tgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctga 229  Q
    ||||||| ||||||||||| || ||||||||||||||||||| ||| |||||||| | |||||||||| |||||||||||||| ||| |||||||||||     
T  18516978 tgaagaccatcagaagctggctgccagaagctgacgtcatcaaagagtctgaagatcatcagaagttgaagttcatcagagtctgaagactggaagctgc 18517077  T
Q  230 agttagttaaa-agttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgct 328  Q
    |||||||||||   || ||||||| ||  || ||||||  ||||| ||| ||||||| ||||||||||||||| | |||||||||||| |||||||||||    
T  18517078 agttagttaaagtttttttattctgaagacacatcattacagaaggaatagaagcctggagcaacgactatttcaaaggaattagaaggcattggatgct 18517177  T
Q  329 tatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||  || | ||||||||| | |||||||||||||||||||| |||||    
T  18517178 taatcattgaagagcgcaag-aaaaggacatagtacaattgtacaac 18517223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 26 - 375
Target Start/End: Original strand, 18129742 - 18130072
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagag 125  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| |  ||||||| ||| | |||||||||| |||||| | | | |||||||  ||    
T  18129742 taattcaagtattggttctgaaagaacaaatgagagcaatgaaattttc--aaaggaaccttgtgttgcaagattgaagacatagtctaaagacaac-ag 18129838  T
Q  126 cgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaag 225  Q
     || ||||||| ||||||| |||              ||||||||||||| |||||||| ||||||||| || |||||||||||||| |||  |||||||    
T  18129839 agtctgaagaccatcagaaactg--------------acgtcatcagagagtctgaagagcctcagaagctgaagttcatcagagtctgaagtctggaag 18129924  T
Q  226 ctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggat 325  Q
    ||||||||||||||||||||||||||| ||  ||  |||||| ||||| |||  |||||| ||| || | |||||| ||||||||||||||  |||||||    
T  18129925 ctgaagttagttaaaagttgttattctgaagacacgtcattgcagaaggaataaaagcctggagtaa-ggctatttcagaggaattagaaggtattggat 18130023  T
Q  326 gcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||||||| ||||||| | | ||||||||| |||||||||| |||||    
T  18130024 gcttatccactgaagagcgtatg-aaaaggacacagtacaattgtacaac 18130072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 155 - 375
Target Start/End: Original strand, 26279894 - 26280112
Alignment:
Q  155 agaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattctta 254  Q
    ||||||||||||||||| ||  |||||||| | ||||||| || |||||||||||||| ||| ||| ||||||  |||||||||||  |||||||| | |    
T  26279894 agaagctgacgtcatca-agcgtctgaagatcatcagaagctgaagttcatcagagtctgaagactagaagctacagttagttaaattttgttattttga 26279992  T
Q  255 atgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaag 354  Q
    |  || |||| |||||||| ||| ||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||| | ||||| ||| | |||||    
T  26279993 agacacatcactgtagaaggaatagaagcctggagcaacgactatttcagatgaattagaagtcattggatgcttatccattgaagagtgcatg-aaaag 26280091  T
Q  355 gacatagtacaattgcacaac 375  Q
    ||||||||||||||| |||||    
T  26280092 gacatagtacaattgtacaac 26280112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 218 - 375
Target Start/End: Complemental strand, 23054550 - 23054394
Alignment:
Q  218 actggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaaga 317  Q
    ||||||||||||||| ||||||| ||||| ||| | | |||| ||||||| ||||| ||| ||||||| ||||||||||||||| |||| |||||||||     
T  23054550 actggaagctgaagtcagttaaatgttgtcattttgattgcacatcattgcagaaggaatagaagcctggagcaacgactatttcagagaaattagaagg 23054451  T
Q  318 cattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||||| ||||||| | ||||||||||| |||||||||||||||||||| |||||    
T  23054450 cattggatgtttatccaatgaagagcgcagg-aaaaggacatagtacaattgtacaac 23054394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 288 - 369
Target Start/End: Original strand, 21683160 - 21683240
Alignment:
Q  288 agcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattg 369  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||    
T  21683160 agcaacgactatttcaaaggaattagaaggcattggatgcttatccagtgaagagcgcagg-aaaaggacatagtacaattg 21683240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 1090485 - 1090590
Alignment:
Q  264 attgtagaagaaatggaagcctagag-caacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagt 362  Q
    |||| ||||| ||||||||||  ||| ||||| ||| || |||  |||| |||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  1090485 attgcagaaggaatggaagcccggaggcaacggctaattcagataaatttgaaggcattggatgcttatccactaaagagcgcatgcaaaaggacatagt 1090584  T
Q  363 acaatt 368  Q
    ||||||    
T  1090585 acaatt 1090590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 9659049 - 9658974
Alignment:
Q  24 tataattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat 99  Q
    |||||||||||||||||||||| | ||||| |||||| ||||| ||||||| |||||||| ||||| |||||||||    
T  9659049 tataattcaagtataggttctggaagaacacatgagatcaatgcaatttacaaaaaggaaacttatgttgcaagat 9658974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 20909579 - 20909478
Alignment:
Q  229 aagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgct 328  Q
    ||||| ||||| |||||||||| ||  ||| |||||||||||||| ||| ||||||| |||||||||| |||| |||||| || ||||||||| ||||||    
T  20909579 aagtttgttaatagttgttattgttt-tgcctatcattgtagaaggaatagaagcctggagcaacgacgatttcagaggatttggaagacattagatgct 20909481  T
Q  329 tat 331  Q
    |||    
T  20909480 tat 20909478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 375
Target Start/End: Original strand, 20109913 - 20110000
Alignment:
Q  287 gagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||||||||||||| |||||||||||| |||||||| || ||| | | ||||| ||| | |||||||||||||||||||| |||||    
T  20109913 gagcaacgactattttaaaggaattagaaggcattggatactcatctattgaagagtgcaag-aaaaggacatagtacaattgtacaac 20110000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 16478671 - 16478739
Alignment:
Q  264 attgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatc 332  Q
    |||| |||||||||  || ||| ||||||||||||||| |||| ||||||||| |||||||||||||||    
T  16478671 attgcagaagaaatataaacctggagcaacgactatttcagagaaattagaaggcattggatgcttatc 16478739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 26703661 - 26703605
Alignment:
Q  296 ctattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaa 352  Q
    |||||| |||| ||||||||||||||| ||||||||||||| |||||||||| ||||    
T  26703661 ctatttcagagaaattagaagacattgtatgcttatccactgaagagcgcagaaaaa 26703605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 24227698 - 24227759
Alignment:
Q  36 ataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    |||||||||||| |||||||||||||||||| ||| ||| |||||||||||| | ||||||||    
T  24227698 ataggttctgaa-gaacaaatgagagcaatggaatctacaaaaaggaagcttgtgttgcaaga 24227759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 20109684 - 20109746
Alignment:
Q  36 ataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    |||||||||| | |||||||||||| ||||| ||| ||| |||||||||||| | ||||||||    
T  20109684 ataggttctggaagaacaaatgagaacaatggaatctacaaaaaggaagcttgtgttgcaaga 20109746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 2819292 - 2819336
Alignment:
Q  287 gagcaacgactattttagaggaattagaagacattggatgcttat 331  Q
    |||||||| |||||| |||||||||||||| |||| |||||||||    
T  2819292 gagcaacggctatttcagaggaattagaaggcattagatgcttat 2819336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 20109808 - 20109844
Alignment:
Q  137 tatcagaagctgtctaccagaagctgacgtcatcaga 173  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  20109808 tatcaaaagctgtctaccagaagttgacgtcatcaga 20109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 23054701 - 23054629
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||||||| ||||| |||| | |||||||||||| ||||  ||||||| ||| |||||||| | ||||||||    
T  23054701 taattcaagcatagggtctggaagaacaaatgagaacaatataatttacaaaagggaagcttgtgttgcaaga 23054629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 17916582 - 17916953
Alignment:
Q  1 tgtgcaggaccatagtcaaaaattataattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagatt 100  Q
    |||||| ||||||| | ||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |  ||||||| |    
T  17916582 tgtgcatgaccataataaaaaattataagtcaagtatatgttctgaaagaacaaatgagagcaatgaaatttac-aaaaggaagcttgtgctgcaagaat 17916680  T
Q  101 caagacagattttgaagacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggag 200  Q
     |||||||| | || ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||| | ||||||| |||||    
T  17916681 gaagacagagtatggagacaaagagcgtctgaagaccatcagaagttgtctaccagaagctgacgtcatcagagagtctaaagaccgtcagaagctggag 17916780  T
Q  201 ttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactatt 300  Q
    |||||||||||| ||| | |||||| || | |||||||||||||||||||||||||| | ||||||| ||||| ||||||||||| ||||||||||||||    
T  17916781 ttcatcagagtctgaagattggaagttggaattagttaaaagttgttattcttaatgtaaatcattgcagaaggaatggaagcctggagcaacgactatt 17916880  T
Q  301 ttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaa 374  Q
    |||||||||||||||| ||||||| |||||||||||||||||| |||| |||| ||||||||||||||| ||||    
T  17916881 ttagaggaattagaaggcattggaagcttatccactaaagagcacagg-aaaatgacatagtacaattgtacaa 17916953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 352
Target Start/End: Complemental strand, 12194158 - 12193945
Alignment:
Q  138 atcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagtt 237  Q
    ||||||||||| || ||| |||||||||||||||| | || |||||| ||||||||| || |||||||||||||  ||| ||||||| ||  ||||||||    
T  12194158 atcagaagctgactgccaaaagctgacgtcatcag-gcatatgaagatcctcagaagctgaagttcatcagagtttgaagactggaaactacagttagtt 12194060  T
Q  238 aaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccacta 337  Q
    |||  |||||||||| ||  || ||||||||||| | ||| ||||||| || |||| ||||||| ||| ||||| |||| |||||||||||| |||| |     
T  12194059 aaagtttgttattctgaagacacatcattgtagagggaatagaagcctggaacaacaactatttcagaagaattggaaggcattggatgcttgtccattg 12193960  T
Q  338 aagagcgcaggaaaa 352  Q
    |||||||||||||||    
T  12193959 aagagcgcaggaaaa 12193945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 352
Target Start/End: Complemental strand, 12438586 - 12438373
Alignment:
Q  138 atcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagtt 237  Q
    ||||||||||| || ||| |||||||||||||||| | || |||||| ||||||||| || |||||||||||||  ||| ||||||| ||  ||||||||    
T  12438586 atcagaagctgactgccaaaagctgacgtcatcag-gcatatgaagatcctcagaagctgaagttcatcagagtttgaagactggaaactacagttagtt 12438488  T
Q  238 aaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccacta 337  Q
    |||  |||||||||| ||  || ||||||||||| | ||| ||||||| || |||| ||||||| ||| ||||| |||| |||||||||||| |||| |     
T  12438487 aaagtttgttattctgaagacacatcattgtagagggaatagaagcctggaacaacaactatttcagaagaattggaaggcattggatgcttgtccattg 12438388  T
Q  338 aagagcgcaggaaaa 352  Q
    |||||||||||||||    
T  12438387 aagagcgcaggaaaa 12438373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 218 - 375
Target Start/End: Complemental strand, 18558197 - 18558041
Alignment:
Q  218 actggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaaga 317  Q
    |||||||||||||||||||||||  | ||  || | | |||| ||||||| ||||| |||  |||||||||||||||||||| | |||| |||||||||     
T  18558197 actggaagctgaagttagttaaatatcgtccttttgattgcacatcattgcagaaggaatataagcctagagcaacgactatatcagagaaattagaagg 18558098  T
Q  318 cattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||||| ||||||||| ||||| ||||| |||||||||||||||||||| |||||    
T  18558097 cattggatgtttatccactgaagagtgcagg-aaaaggacatagtacaattgtacaac 18558041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 12541755 - 12541699
Alignment:
Q  269 agaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggat 325  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  12541755 agaagaaatagaagcctggagaaacgactattttagaggaattagaaggcattggat 12541699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 375
Target Start/End: Original strand, 19505467 - 19505572
Alignment:
Q  269 agaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggac-atagtacaat 367  Q
    ||||| ||| ||| ||| |||||||| |||||| |||||||||||||| ||||| ||||||| |||||| ||||| || |  ||||||| ||||||||||    
T  19505467 agaaggaatagaatcctcgagcaacggctatttcagaggaattagaaggcattgaatgcttacccactatagagctcatg--aaaggacaatagtacaat 19505564  T
Q  368 tgcacaac 375  Q
    || |||||    
T  19505565 tgtacaac 19505572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 18772755 - 18772685
Alignment:
Q  260 tatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttat 331  Q
    |||||||||||||||| |||| |||| ||||||||||||  | ||||||||| |||| ||||||||||||||    
T  18772755 tatcattgtagaagaa-tggatgcctggagcaacgactaaatcagaggaatttgaaggcattggatgcttat 18772685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 12194238 - 12194171
Alignment:
Q  29 ttcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||||||| | ||||||||||||||| |||||||||| |||||||  ||||||||||| | ||||||||    
T  12194238 ttcaagtattgattctgaatgaacaaaagagagcaatggaatttac--aaaggaagcttgtgttgcaaga 12194171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 12438666 - 12438599
Alignment:
Q  29 ttcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||||||| | ||||||||||||||| |||||||||| |||||||  ||||||||||| | ||||||||    
T  12438666 ttcaagtattgattctgaatgaacaaaagagagcaatggaatttac--aaaggaagcttgtgttgcaaga 12438599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 23772730 - 23772669
Alignment:
Q  36 ataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    |||||||||||| |||||||||||||||||| ||| ||| |||||||||||| | ||||||||    
T  23772730 ataggttctgaa-gaacaaatgagagcaatggaatctacaaaaaggaagcttgtgttgcaaga 23772669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 1209838 - 1209890
Alignment:
Q  323 gatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||||||||||||||||||||||||||||| |   |||||||||||| |||||    
T  1209838 gatgcttatccactaaagagcgcaggaaaaggataatagtacaattgtacaac 1209890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 26833422 - 26833350
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||||||| |||||||||| | |||||||||||||||||  ||| ||| ||||||| |||| | ||||||||    
T  26833422 taattcaagcataggttctggaagaacaaatgagagcaatagaatctacaaaaaggaggcttgtgttgcaaga 26833350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 26833281 - 26833224
Alignment:
Q  152 accagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcaga 209  Q
    |||||||||||| ||||||||||  |||||||| | |||||||||| || ||||||||    
T  26833281 accagaagctgatgtcatcagaggttctgaagatcatcagaagttgaagatcatcaga 26833224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 28 - 375
Target Start/End: Original strand, 11287 - 11633
Alignment:
Q  28 attcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagagcg 127  Q
    ||||||||||  |||||||| ||||||||||| |||||| ||||||| ||||||||||   | |||||||||| |||||||| | |||||||||||||||    
T  11287 attcaagtatgagttctgaaagaacaaatgagggcaatggaatttacaaaaaggaagcccttgttgcaagattgaagacagagtctgaagacaaagagcg 11386  T
Q  128 tttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagct 227  Q
    | |||| || |||| |||||| ||||||||||||| |||||||| ||| |||||||| ||||||||| || |||||| ||||||| ||| ||||||||||    
T  11387 tctgaacaccatcaaaagctggctaccagaagctggcgtcatcaaagagtctgaagagcctcagaagctgaagttcaacagagtctgaagactggaagct 11486  T
Q  228 gaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgc 327  Q
    | ||||||||||||||||||||| | ||| ||||| |||||||||| |||||||||||||| |||||||||||| ||| |||||||||  ||||||||||    
T  11487 ggagttagttaaaagttgttattttgaattcatatgattgtagaaggaatggaagcctagaacaacgactatttcagaagaattagaaagcattggatgc 11586  T
Q  328 ttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||| | ||||||||||| ||||| |||| ||||||||| |||||    
T  11587 ttatccattgaagagcgcagg-aaaagaacattgtacaattgtacaac 11633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 28 - 375
Target Start/End: Original strand, 4004 - 4350
Alignment:
Q  28 attcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagagcg 127  Q
    ||||||||||  |||||||| ||||||||||| |||||| ||||||| ||||||||||   | |||||||||| |||||||| | |||||||||||||||    
T  4004 attcaagtatgagttctgaaagaacaaatgagggcaatggaatttacaaaaaggaagcccttgttgcaagattgaagacagagtctgaagacaaagagcg 4103  T
Q  128 tttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagct 227  Q
    | |||| || |||| || ||| ||||||||||||| |||||||| ||| |||||||| ||||||||| || |||||| ||||||| ||| ||||||||||    
T  4104 tctgaacaccatcaaaaactggctaccagaagctggcgtcatcaaagagtctgaagagcctcagaagctgaagttcaacagagtctgaagactggaagct 4203  T
Q  228 gaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgc 327  Q
    | ||||||||||||||||||||| | ||| ||||| |||||||||| |||||||||||||| |||||||||||| ||| |||||||||  ||||||||||    
T  4204 ggagttagttaaaagttgttattttgaattcatatgattgtagaaggaatggaagcctagaacaacgactatttcagaagaattagaaagcattggatgc 4303  T
Q  328 ttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||| | ||||||||||| ||||| |||| ||||||||| |||||    
T  4304 ttatccattgaagagcgcagg-aaaagaacattgtacaattgtacaac 4350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0772 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 26 - 375
Target Start/End: Original strand, 628 - 963
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagag 125  Q
    ||||||||||||| |||||| | ||||||| |||||||||| ||||||  |||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  628 taattcaagtatatgttctggaagaacaaaagagagcaatgtaatttataaaaaggaagcttatgttgcaagattcaagacagagtctgaagacaaagag 727  T
Q  126 cgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccgaaaactggaa 224  Q
    |||  |||||| |||||||||||              ||||||||||||| | ||||||||| |||||||||||||||||| |||||| ||| |||||||    
T  728 cgtcggaagaccatcagaagctg--------------acgtcatcagagagtttgaagaaccatcagaagttggagttcataagagtctgaagactggaa 813  T
Q  225 gctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattgga 324  Q
    |||||||||||||||| |||||||||||  ||||||||||||| | ||| ||||||||| | ||||||| ||||||| |||||| |||||||||||||||    
T  814 gctgaagttagttaaatgttgttattctgtatgcatatcattgcataaggaatggaagcttggagcaacaactatttcagaggatttagaagacattgga 913  T
Q  325 tgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||||||||||| |||||| || | |||||| ||||||||||||| |||||    
T  914 tgcttatccactgaagagcacatg-aaaagggcatagtacaattgtacaac 963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 369
Target Start/End: Complemental strand, 13028121 - 13027806
Alignment:
Q  53 aaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagagcgtttgaagactatcagaagctgtcta 152  Q
    |||||||||||||| ||||  |  |||||||| || | ||||| || | |||||||| | |||||||||||||||| | ||||| |||||||| ||||||    
T  13028121 aaatgagagcaatggaattgtc--aaaggaagattgtgttgcatgaatgaagacagagtctgaagacaaagagcgtctaaagaccatcagaagttgtcta 13028024  T
Q  153 ccagaagctgacgtcatcagagaatctg-aagaacc-tcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttatt 250  Q
    ||| ||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||| ||| || |||||||||||||||||||| ||| |||||    
T  13028023 ccacaagctgacgtcatcagagagtctggaagaaccatcagaagctggagttcatcagagtctgaagacgggaagctgaagttagttaaatgtttttatt 13027924  T
Q  251 cttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaa 350  Q
    || |||||||||||||| ||||| ||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||| |    
T  13027923 ctgaatgcatatcattgcagaaggaatggaagcctggagcaacggctatttcagaggaattagaaggcattggatgcttatccactgaagagcgcagg-a 13027825  T
Q  351 aaaggacatagtacaattg 369  Q
    ||| |||||| ||||||||    
T  13027824 aaatgacatattacaattg 13027806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 26 - 367
Target Start/End: Original strand, 16324261 - 16324598
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagag 125  Q
    |||||||| ||| |||| |||| |||||||||||||||||||||||  |  ||||||||||| | |||||||| | |||||||| | |||||||||||||    
T  16324261 taattcaaatattggttttgaaagaacaaatgagagcaatgaaattctc--aaaggaagcttgtgttgcaagaatgaagacagagtctgaagacaaagag 16324358  T
Q  126 cgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaag 225  Q
    | | ||||||| |||||  |||| |||||| ||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| || ||| |||||| |    
T  16324359 catctgaagaccatcagctgctgcctaccaaaagctgatgtcattagagagtctgaagaacctcaaaagttggagttcatcagaatctgaagactggatg 16324458  T
Q  226 ctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggat 325  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||||| | | |||||||  | |||||||||||| |||||||||||||| ||||| ||    
T  16324459 ctgaaattagtcaaaagttgttattctgaatgcatatcattgtagaaggatttgaagcctgaaacaacgactatttcagaggaattagaaggcattgtat 16324558  T
Q  326 gcttatccactaaagagcgcaggaaaaaggacatagtacaat 367  Q
    ||||||||| | |||||||||||  |||||||| ||||||||    
T  16324559 gcttatccattgaagagcgcagg--aaaggacacagtacaat 16324598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 101 - 352
Target Start/End: Original strand, 14356949 - 14357200
Alignment:
Q  101 caagacagattttgaagacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggag 200  Q
    ||||||||| | |||| || ||||| || ||||||  || |||||||| || ||||||| |||||||||||||||||||||||| ||||| ||| || ||    
T  14356949 caagacagagtctgaaaactaagagagtgtgaagatcattagaagctgactgccagaagttgacgtcatcagagaatctgaagagcctcaaaagctgaag 14357048  T
Q  201 ttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactatt 300  Q
    |||| |||||||  || | ||||| ||||||||||||||||||||||||||| ||  || ||||||| | ||| ||| ||||||| |||||| | |||||    
T  14357049 ttcaacagagtctaaagattggaaactgaagttagttaaaagttgttattctgaagacacatcattgcaaaaggaatagaagcctggagcaatgtctatt 14357148  T
Q  301 ttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaa 352  Q
    | |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  14357149 tcagaggaattagaaggcattggatggttatccactaaagagcgcaggaaaa 14357200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 218 - 375
Target Start/End: Original strand, 20570934 - 20571090
Alignment:
Q  218 actggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaaga 317  Q
    ||||||||||| ||||||||||| ||||||||||| ||  || || |||||||||| ||| |||| || ||||||||||||||| ||||||||||||||     
T  20570934 actggaagctgcagttagttaaaggttgttattctgaagtcacataattgtagaaggaatagaagtctggagcaacgactatttcagaggaattagaagg 20571033  T
Q  318 cattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||| |||||||||||||| |||||| || |||||||||||||||||||||| |||||    
T  20571034 catttgatgcttatccactgaagagcaca-gaaaaaggacatagtacaattgtacaac 20571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 222 - 375
Target Start/End: Original strand, 14902400 - 14902549
Alignment:
Q  222 gaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacatt 321  Q
    ||||||||||||||||||   ||||||||||| |  |||||||||| ||||| ||| ||||| | |||||||||||||||||||||||||||||| || |    
T  14902400 gaagctgaagttagttaatgtttgttattcttga--catatcattgcagaaggaatagaagcttggagcaacgactattttagaggaattagaaggcagt 14902497  T
Q  322 ggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    | |||||| ||||||||||||||| |  |||| ||||||||||||||| |||||    
T  14902498 gaatgcttctccactaaagagcgctg--aaaatgacatagtacaattgtacaac 14902549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 375
Target Start/End: Complemental strand, 2651989 - 2651820
Alignment:
Q  205 tcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttag 304  Q
    |||||||| ||| ||| |||| || |||||||||||  |||||||||| ||  || ||||||| | ||| ||| ||||| | ||| ||||||||||| ||    
T  2651989 tcagagtctgaagactagaagttgcagttagttaaagtttgttattctgaagacacatcattgcaaaaggaatagaagcttggagtaacgactatttcag 2651890  T
Q  305 aggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||||||||||| ||||| ||||||||||||| ||||||| ||| |||||||||||||||||||| |||||    
T  2651889 aggaattagaaggcattgaatgcttatccactgaagagcgtagg-aaaaggacatagtacaattgtacaac 2651820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 234 - 375
Target Start/End: Complemental strand, 18774209 - 18774069
Alignment:
Q  234 agttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatcc 333  Q
    ||||||||||||||||| | ||   | ||||||| ||||| ||| || |||||||||||| |||||||  ||||||||||||| |||| |||||||||||    
T  18774209 agttaaaagttgttattatgaagaaacatcattgcagaaggaatagatgcctagagcaacaactatttaggaggaattagaaggcattagatgcttatcc 18774110  T
Q  334 actaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||| ||||||||||| ||||| ||||| |||||||| |||||    
T  18774109 acttaagagcgcagg-aaaagaacataatacaattgtacaac 18774069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 19888879 - 19889012
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagag 125  Q
    ||||||||||||  |||||||| |||||||||||||||||||||||  |  ||||||||||| | ||| || | | |  ||||| | |||||||||||||    
T  19888879 taattcaagtattagttctgaaagaacaaatgagagcaatgaaatt--ctcaaaggaagcttgtgttgaaataatga--acagagtctgaagacaaagag 19888974  T
Q  126 cgtttgaagactatcagaagctgtctaccagaagctga 163  Q
    ||| ||||||  | |||||| |||||| ||||||||||    
T  19888975 cgtctgaagatcaccagaagttgtctatcagaagctga 19889012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 10249955 - 10249877
Alignment:
Q  255 atgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatcc 333  Q
    |||| |||||||| ||||| ||| |||| |||||||||| |||| || ||||||||| |||| ||||||||||||||||    
T  10249955 atgcctatcattgcagaaggaatagaagtctagagcaacaactaattaagaggaatttgaagtcattggatgcttatcc 10249877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 375
Target Start/End: Complemental strand, 20577411 - 20577305
Alignment:
Q  269 agaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaatt 368  Q
    ||||||||| |||||||  ||||| | |||||| |||| ||||||||| |||||||| |||||||| | ||||| || | |||  ||| |||||||||||    
T  20577411 agaagaaatagaagcctgaagcaatggctatttcagagaaattagaaggcattggattcttatccaatgaagagtgcggtaaatgggaaatagtacaatt 20577312  T
Q  369 gcacaac 375  Q
    |||||||    
T  20577311 gcacaac 20577305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 14902232 - 14902301
Alignment:
Q  27 aattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||||||||| ||||||||| ||| ||| ||||||||||||||||  |||||||||| |||| ||||||||    
T  14902232 aattcaagtattggttctgaaagaataaaagagagcaatgaaattt--gaaaaggaaggttatgttgcaaga 14902301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 17812280 - 17812344
Alignment:
Q  269 agaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatcc 333  Q
    ||||||||| ||||  | |||||||| |||||| |||||||||||||| ||||||||||||||||    
T  17812280 agaagaaatagaagtttggagcaacggctatttcagaggaattagaaggcattggatgcttatcc 17812344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 21350358 - 21350477
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagag 125  Q
    |||||||||| | |||| ||||  |||||| ||||||||||||||||  | ||||||||||| | |||||||||| ||||| || | | ||||| || |     
T  21350358 taattcaagttttggttatgaaaaaacaaacgagagcaatgaaattt--gcaaaggaagcttttgttgcaagattaaagactgagtctaaagac-aacat 21350454  T
Q  126 cgtttgaagactatcagaagctg 148  Q
    ||||||||||| |||||||||||    
T  21350455 cgtttgaagaccatcagaagctg 21350477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 19889020 - 19889084
Alignment:
Q  310 ttagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||| ||||||||| |||||||||  |||||||||| ||||||||||||||| |||| |||||    
T  19889020 ttagaaggcattggatgtttatccactggagagcgcagg-aaaaggacatagtacgattgtacaac 19889084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 21350469 - 21350517
Alignment:
Q  154 cagaagctgacgtcatcagagaatctgaagaacctcagaagttggagtt 202  Q
    |||||||||||||||||||||| |||||||| ||| ||||| |||||||    
T  21350469 cagaagctgacgtcatcagagagtctgaagagccttagaagctggagtt 21350517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 375
Target Start/End: Complemental strand, 18394643 - 18394553
Alignment:
Q  287 gagcaacgactattttagaggaattagaagacattggatgcttatccact-aaagagcgcaggaaaaaggac--atagtacaattgcacaac 375  Q
    |||||||||| |||| |||||||||| ||| |||| || ||||||||||| || ||||||| || |||||||  |||||||||||| |||||    
T  18394643 gagcaacgaccatttcagaggaattataaggcatttgaggcttatccactgaaggagcgca-gagaaaggacaaatagtacaattgtacaac 18394553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 99 - 375
Target Start/End: Original strand, 10213 - 10489
Alignment:
Q  99 ttcaagacagattttgaagacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc-tcagaagttg 197  Q
    |||||||||||   |||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| | ||||| ||    
T  10213 ttcaagacagagactgaagataaaaagcgtctgaagaccatcagaagctgtctaccagaagctgacgtcatcggagagtctgaagaaccattagaagctg 10312  T
Q  198 gagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgact 297  Q
    |||||||||||||||  || ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| |||| ||||| ||||||||||||    
T  10313 gagttcatcagagtctaaagactggaagctgaagttagttaaatgttgttattcttaatgcatatcattgcggaaggaatgcaagccgagagcaacgact 10412  T
Q  298 attttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||| |||| ||||||||| ||||||||| ||||||||| || |||||||| ||||||| |||||||||||| |||||    
T  10413 atttcagagaaattagaaggcattggatgtttatccactgaaaagcgcagg-aaaaggatatagtacaattgtacaac 10489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 124 - 374
Target Start/End: Original strand, 8728878 - 8729127
Alignment:
Q  124 agcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccgaaaactgg 222  Q
    ||||| |||||||||||||||| || |||||||||||||||||||||  ||  ||||||||||| ||||||| || |||||||||||||| ||| |||||    
T  8728878 agcgtctgaagactatcagaagttgcctaccagaagctgacgtcatcttag--tctgaagaaccatcagaagctgaagttcatcagagtctgaagactgg 8728975  T
Q  223 aagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattg 322  Q
    || |||||||| |||||| ||||||||| | ||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  8728976 aaactgaagtttgttaaatgttgttattttgaatgcatatgattgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattg 8729075  T
Q  323 gatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaa 374  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  8729076 gatgcttatccactgaagagcgcatgaaaaaggacatagtacaattgtacaa 8729127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 124 - 374
Target Start/End: Original strand, 9080765 - 9081014
Alignment:
Q  124 agcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccgaaaactgg 222  Q
    ||||| |||||||||||||||| || |||||||||||||||||||||  ||  ||||||||||| ||||||| || |||||||||||||| ||| |||||    
T  9080765 agcgtctgaagactatcagaagttgcctaccagaagctgacgtcatcttag--tctgaagaaccatcagaagctgaagttcatcagagtctgaagactgg 9080862  T
Q  223 aagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattg 322  Q
    || |||||||| |||||| ||||||||| | ||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  9080863 aaactgaagtttgttaaatgttgttattttgaatgcatatgattgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattg 9080962  T
Q  323 gatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaa 374  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  9080963 gatgcttatccactgaagagcgcatgaaaaaggacatagtacaattgtacaa 9081014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 29 - 375
Target Start/End: Complemental strand, 16882661 - 16882315
Alignment:
Q  29 ttcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagagcgt 128  Q
    ||||||||| ||| ||| | ||||||||||||||| || ||||| | |||||||||| | | |||||||||||||||| || | | ||||||||||||||    
T  16882661 ttcaagtattggtcctggaagaacaaatgagagcactgcaatttgcaaaaaggaagcatgtgttgcaagattcaagacggagtctaaagacaaagagcgt 16882562  T
Q  129 ttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccgaaaactggaagct 227  Q
     | |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||  | || ||||||||  ||| ||||||||||    
T  16882561 ctaaagactataagaagttgtctaccagaagctgatgtcatcagagagtctgaagaaccatcagaagttaaaattgatcagagtttgaagactggaagct 16882462  T
Q  228 gaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgc 327  Q
     ||||| |||||||||||||||||| |||| |||| |||| ||||| |||||||||||  | ||||  |||||| |||||||||| ||| ||||||||||    
T  16882461 aaagtttgttaaaagttgttattctgaatggatatgattgcagaaggaatggaagcctgcaacaacagctatttcagaggaattaaaaggcattggatgc 16882362  T
Q  328 ttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||||| || |||||||||||||  |||||||||||||| |||||    
T  16882361 ttatccactgaatagcgcaggaaaaa-aacatagtacaattgtacaac 16882315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 155 - 375
Target Start/End: Original strand, 16794197 - 16794414
Alignment:
Q  155 agaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattctta 254  Q
    |||||||||| ||||||||| ||  ||||  ||||||||| ||||| ||||||||||| |||  |||||||||||||||||||||||||||||||||| |    
T  16794197 agaagctgacttcatcagagtat--gaagggcctcagaagctggagctcatcagagtctgaagcctggaagctgaagttagttaaaagttgttattctga 16794294  T
Q  255 atgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaag 354  Q
    |||||||| |||| ||||| |||||||||||  ||||| |||||||| ||||||||||| || ||||||||||||||||| | ||||||||| |||||||    
T  16794295 atgcatatgattgcagaaggaatggaagcctgaagcaatgactatttcagaggaattaggaggcattggatgcttatccattgaagagcgca-gaaaaag 16794393  T
Q  355 gacatagtacaattgcacaac 375  Q
    ||||||||||||||| |||||    
T  16794394 gacatagtacaattgtacaac 16794414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 171 - 369
Target Start/End: Complemental strand, 20418461 - 20418264
Alignment:
Q  171 agagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtag 270  Q
    ||||| |||||||| ||||||||| || ||||||||||| || ||| | ||||||||| ||||||||||||||||||||||| ||| || || |||||||    
T  20418461 agagagtctgaagagcctcagaagctgaagttcatcagattctgaagattggaagctggagttagttaaaagttgttattctgaatacacatgattgtag 20418362  T
Q  271 aagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattg 369  Q
    |||||||||||| || ||||||||||||||| |||||||||||||| |||||||| ||||||| || ||||||||| | |||| |||||||||||||||    
T  20418361 aagaaatggaagtctggagcaacgactatttcagaggaattagaaggcattggatacttatcctctgaagagcgcaag-aaaatgacatagtacaattg 20418264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 130 - 341
Target Start/End: Complemental strand, 27375048 - 27374832
Alignment:
Q  130 tgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccgaaaactggaagctg 228  Q
    ||||||| ||||||||||| ||| |||||| ||||||||||||||| ||||||||||| ||||||| | |||||||||| |||  ||| | |||||||||    
T  27375048 tgaagaccatcagaagctgactatcagaagttgacgtcatcagagagtctgaagaaccatcagaagctagagttcatcaaagtatgaagattggaagctg 27374949  T
Q  229 aagttagttaaaagttgttat----tcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattgga 324  Q
    || | |||| |||||||||||    ||| ||  |  |||||||||||||  |||||||||||||||||||| | |||||||||||||||||| |||||||    
T  27374948 aaatcagttcaaagttgttatatattctgaagtctgatcattgtagaaggtatggaagcctagagcaacgagtgttttagaggaattagaaggcattgga 27374849  T
Q  325 tgcttatccactaaaga 341  Q
    ||||| |||||||||||    
T  27374848 tgcttctccactaaaga 27374832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 26 - 281
Target Start/End: Complemental strand, 7494641 - 7494387
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagag 125  Q
    |||||||||| | | || |||| |||||||||||||||||| |||||   ||| |||||||||| |||||||||| |||||||| | ||| |||||||||    
T  7494641 taattcaagttttgattatgaaagaacaaatgagagcaatggaatttttcaaa-ggaagcttatgttgcaagattgaagacagagtctgatgacaaagag 7494543  T
Q  126 cgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaag 225  Q
    ||| ||||||| || |||||||  | | |||||||| |  |||||||||| |||||||| | ||||||| || |||||||||||||  ||| | ||||||    
T  7494542 cgtctgaagaccattagaagctaaccatcagaagctaagttcatcagagagtctgaagagcatcagaagctgaagttcatcagagtatgaagattggaag 7494443  T
Q  226 ctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaa 281  Q
    ||| ||||||||||| |||| |||| | ||| |||||||||| ||||| |||||||    
T  7494442 ctggagttagttaaacgttgctattatgaattcatatcattgcagaagtaatggaa 7494387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 171 - 375
Target Start/End: Original strand, 22766464 - 22766663
Alignment:
Q  171 agagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtag 270  Q
    |||| ||||||||| | ||||||| || ||||||||| |||| ||| ||||||||||    |||||| || ||||||||||| ||||| ||| |||| ||    
T  22766464 agagcatctgaagatcatcagaagctgaagttcatcaaagtctgaagactggaagct----ttagtttaa-gttgttattctgaatgcttatgattgcag 22766558  T
Q  271 aagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggac-atagtacaattg 369  Q
    ||| |||||||||||||||||||| ||| || ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||    
T  22766559 aaggaatggaagcctagagcaacggctaattcagaggaatttgaaggcattggatgcttatccactgaagagcgcagg-aaaaggacaatagtacaattg 22766657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 222 - 375
Target Start/End: Original strand, 4243151 - 4243302
Alignment:
Q  222 gaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacatt 321  Q
    |||||||||||| |||| ||||||||||||| ||| | ||| |||| | |||||| ||||| || ||||||||||||||| |||||||||| ||| ||||    
T  4243151 gaagctgaagtttgttagaagttgttattctgaatacttatgattgcataagaaaaggaagtctggagcaacgactatttcagaggaatta-aaggcatt 4243249  T
Q  322 ggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    | ||||||||||||| ||||||||| | |||| ||||||||||||||| |||||    
T  4243250 gaatgcttatccactgaagagcgcaag-aaaatgacatagtacaattgtacaac 4243302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 375
Target Start/End: Complemental strand, 21317527 - 21317417
Alignment:
Q  264 attgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagta 363  Q
    |||| ||||| ||| ||||||||||||||||||||||||||| |||||| ||| |||| ||||||||||| || ||||||||||| ||||||||||| ||    
T  21317527 attgcagaaggaatagaagcctagagcaacgactattttagatgaattataaggcatttgatgcttatcctctgaagagcgcagg-aaaaggacataata 21317429  T
Q  364 caattgcacaac 375  Q
    |||||| |||||    
T  21317428 caattgtacaac 21317417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 154 - 281
Target Start/End: Complemental strand, 7477823 - 7477696
Alignment:
Q  154 cagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattctt 253  Q
    ||||||||||| |||||||||| |||||||| | ||||||| || ||||||| |||||  ||| ||||||||||  |||||||||||  ||||||||||     
T  7477823 cagaagctgacatcatcagagagtctgaagagcatcagaagctgaagttcattagagtatgaagactggaagctagagttagttaaacattgttattctg 7477724  T
Q  254 aatgcatatcattgtagaagaaatggaa 281  Q
    ||| |||||||||| ||||| |||||||    
T  7477723 aattcatatcattgcagaaggaatggaa 7477696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 334
Target Start/End: Original strand, 19197865 - 19197969
Alignment:
Q  230 agttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgctt 329  Q
    |||||| ||||  |||||||||| ||||||||| |||| ||||| ||||||||||| |||||||||||| || ||||||||| |||| ||||||||| ||    
T  19197865 agttagctaaattttgttattctgaatgcatatgattgcagaaggaatggaagcctggagcaacgactacttcagaggaatttgaaggcattggatgatt 19197964  T
Q  330 atcca 334  Q
    |||||    
T  19197965 atcca 19197969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 230 - 352
Target Start/End: Complemental strand, 14007741 - 14007620
Alignment:
Q  230 agttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgctt 329  Q
    |||| |||||||||||||| ||| | ||| ||| ||| |||||| |||||||||||  | ||| | ||| |||||||||||| |||| ||||||||| ||    
T  14007741 agtttgttaaaagttgttactctca-tgcctatgattatagaaggaatggaagcctgcaacaatggctaatttagaggaatttgaaggcattggatgttt 14007643  T
Q  330 atccactaaagagcgcaggaaaa 352  Q
    |||||||||||||||||||||||    
T  14007642 atccactaaagagcgcaggaaaa 14007620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 14077405 - 14077482
Alignment:
Q  297 tattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| || |||||    
T  14077405 tatttcagaggaattagaagacattggatgcttatccactgaagagcgcaag-aaaaggacatagtacaactgtacaac 14077482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 8728804 - 8728877
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat 99  Q
    |||||||||||||||||||| | |||||||||||||||||| ||||||| |||||||||||| | |||||||||    
T  8728804 taattcaagtataggttctggaagaacaaatgagagcaatggaatttacaaaaaggaagcttgtgttgcaagat 8728877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 9080691 - 9080764
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat 99  Q
    |||||||||||||||||||| | |||||||||||||||||| ||||||| |||||||||||| | |||||||||    
T  9080691 taattcaagtataggttctggaagaacaaatgagagcaatggaatttacaaaaaggaagcttgtgttgcaagat 9080764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 334
Target Start/End: Complemental strand, 17697792 - 17697676
Alignment:
Q  218 actggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaaga 317  Q
    ||||||||||||||||||||||| ||||| ||||| | |||  ||||||| ||||| ||| ||||||| ||||||   ||| || ||||||||| ||||     
T  17697792 actggaagctgaagttagttaaatgttgtcattctaattgcgcatcattgcagaaggaatagaagcctggagcaatagctaattcagaggaatttgaagg 17697693  T
Q  318 cattggatgcttatcca 334  Q
    |||||||||||||||||    
T  17697692 cattggatgcttatcca 17697676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 375
Target Start/End: Complemental strand, 10851989 - 10851835
Alignment:
Q  220 tggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagaca 319  Q
    |||||| |||||||||||||| ||||| ||| | | |||| ||||||| ||||| |||  |||| | ||| |||| |||||| | |||| ||||||  ||    
T  10851989 tggaagttgaagttagttaaatgttgtcattttgattgcacatcattgcagaaggaataaaagcttggagtaacggctatttcaaaggagttagaaagca 10851890  T
Q  320 ttggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||||||||||| |||| |||||| || | |||||||||||||||||||| |||||    
T  10851889 ttggatgcttattcactgaagagcacaag-aaaaggacatagtacaattgtacaac 10851835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 352
Target Start/End: Complemental strand, 14072855 - 14072739
Alignment:
Q  235 gttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatcca 334  Q
    |||||| ||||||||||| | ||||||| | || ||||| ||||| ||||| ||||||||| || |||||||||||| |||| |||||||||||||||||    
T  14072855 gttaaatgttgttattctca-tgcatataactgcagaaggaatgggagcctggagcaacgaataatttagaggaatttgaaggcattggatgcttatcca 14072757  T
Q  335 ctaaagagcgcaggaaaa 352  Q
     | |||| ||| ||||||    
T  14072756 ttgaagaacgcgggaaaa 14072739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 369
Target Start/End: Complemental strand, 11078778 - 11078679
Alignment:
Q  270 gaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggaca-tagtacaatt 368  Q
    |||| ||| ||||||| ||||||| ||| |||||||||||| ||||| |||| |||||||||||||| ||||||| || |||||||||| ||||||||||    
T  11078778 gaaggaatagaagcctggagcaactactcttttagaggaatcagaaggcattagatgcttatccacttaagagcgtag-aaaaaggacaatagtacaatt 11078680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 347
Target Start/End: Complemental strand, 3087673 - 3087590
Alignment:
Q  264 attgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcag 347  Q
    |||| ||||| ||| |||||||  |||||| ||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||    
T  3087673 attgcagaaggaatagaagcctgaagcaacaactctttcagaggaattagaatacattgaatgcttatccactaaagagcgcag 3087590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 375
Target Start/End: Complemental strand, 13654185 - 13653942
Alignment:
Q  130 tgaagactatcagaagctgtctaccagaagct-gacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctg 228  Q
    ||||||| ||||||||||| || |||||  || |||||||||| ||  |||||||| | |||||  ||| ||  |||||||||| |||  |  |||| ||    
T  13654185 tgaagaccatcagaagctgactgccagagtcttgacgtcatca-agcgtctgaagaccatcagagtttgaagcacatcagagtctgaagtcaagaagttg 13654087  T
Q  229 aagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgct 328  Q
     |||||||| ||  |||||||||| ||  || ||||||| ||| ||| | ||||||| ||||||| ||||||| |||||||||||||| |||| |||  |    
T  13654086 cagttagttgaattttgttattctgaagacacatcattgcagaggaa-tagaagcctggagcaacaactatttcagaggaattagaaggcattagattat 13653988  T
Q  329 tatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||||||| |||| | || ||||||||||||| |||||||| |||||    
T  13653987 tatccactgaagaacaca-gaaaaaggacataatacaattgtacaac 13653942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 315198 - 315133
Alignment:
Q  287 gagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaa 352  Q
    |||||||| |||||| |||||||||||||| ||||| ||||||||||||| ||||||||| |||||    
T  315198 gagcaacggctatttcagaggaattagaaggcattgaatgcttatccactgaagagcgcatgaaaa 315133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 4242990 - 4243143
Alignment:
Q  32 aagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat----tc-----aagacagattttgaagacaaa 122  Q
    ||||||||||| || | |||||||||||||||||| ||||||| ||||||||||||   ||||||||     ||     |||||| | | | ||| ||||    
T  4242990 aagtataggttatggaagaacaaatgagagcaatggaatttacaaaaaggaagcttgagttgcaagaaaaagtctgaggaagacaaagtctaaaggcaaa 4243089  T
Q  123 gagcgtttgaaga-ctatcagaagctgtctaccagaagctgacgtcatcagaga 175  Q
    |||| | |||||| |||||| |||||||||||||||||||||||||||||||||    
T  4243090 gagcatctgaagaactatcaaaagctgtctaccagaagctgacgtcatcagaga 4243143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 16305188 - 16305271
Alignment:
Q  269 agaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaa 352  Q
    ||||| ||| |||||||  ||||| || ||||| ||||||| |||||| |||||||| ||||| ||||||||||||||||||||    
T  16305188 agaaggaatagaagcctgaagcaatgaatatttcagaggaaatagaaggcattggatacttatgcactaaagagcgcaggaaaa 16305271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 7477901 - 7477825
Alignment:
Q  44 tgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaa 121  Q
    |||| ||||||||||||||||||||||||   ||| |||||||||| |||||||||| |||||||| | |||||||||    
T  7477901 tgaaagaacaaatgagagcaatgaaatttttcaaa-ggaagcttatgttgcaagattgaagacagagtctgaagacaa 7477825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 375
Target Start/End: Complemental strand, 13699471 - 13699384
Alignment:
Q  287 gagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||| ||||||| |||||||| ||||| |||||||||||||||| |  ||||||| |  |||||| |||||||||||||| |||||    
T  13699471 gagcaacaactatttcagaggaataagaaggcattggatgcttatccgcataagagcgta-caaaaagaacatagtacaattgtacaac 13699384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 50722084 - 50721991
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaa 121  Q
    |||||||||| | |||| ||||  |||||| |||||||||||||||| |  ||||||||||||| |||||||||| ||||| || | |||||||||    
T  50722084 taattcaagttttggttttgaaaaaacaaacgagagcaatgaaattttc--aaaggaagcttatgttgcaagattaaagaccgagtctgaagacaa 50721991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 50790765 - 50790858
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaa 121  Q
    |||||||||| | |||| ||||  |||||| |||||||||||||||| |  ||||||||||||| |||||||||| ||||| || | |||||||||    
T  50790765 taattcaagttttggttttgaaaaaacaaacgagagcaatgaaattttc--aaaggaagcttatgttgcaagattaaagaccgagtctgaagacaa 50790858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 19197656 - 19197719
Alignment:
Q  36 ataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat 99  Q
    |||||||||| | |||||||||||||||||||||||||| |||||  ||||||| || ||||||    
T  19197656 ataggttctggaagaacaaatgagagcaatgaaatttacaaaaagtgagcttatgtttcaagat 19197719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 20418548 - 20418478
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    |||||||||||| |||| |||| |||||||||||||||||| |||||||  ||| ||||||| | ||||||||    
T  20418548 taattcaagtattggttttgaaagaacaaatgagagcaatggaatttac--aaaagaagcttttgttgcaaga 20418478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 10852135 - 10852067
Alignment:
Q  30 tcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||| |||||||||||| |||||||||||||||||  ||| ||| ||||| |||||| | ||||||||    
T  10852135 tcaagcataggttctgaaagaacaaatgagagcaattgaatctacaaaaagaaagcttgtgttgcaaga 10852067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 12397318 - 12397262
Alignment:
Q  138 atcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaag 194  Q
    ||||||||||| ||||||||||||||| |||||||||  |||||||| | |||||||    
T  12397318 atcagaagctgcctaccagaagctgacatcatcagaggttctgaagatcatcagaag 12397262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 14077295 - 14077331
Alignment:
Q  137 tatcagaagctgtctaccagaagctgacgtcatcaga 173  Q
    ||||| |||||||||||||||||||||||||||||||    
T  14077295 tatcaaaagctgtctaccagaagctgacgtcatcaga 14077331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 27851675 - 27851611
Alignment:
Q  269 agaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatcc 333  Q
    ||||| ||| ||||| | ||||||| ||||||| |||| | ||||||||||||||||||||||||    
T  27851675 agaaggaatagaagcatggagcaacaactatttcagagaagttagaagacattggatgcttatcc 27851611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 13699667 - 13699603
Alignment:
Q  32 aagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    |||||| ||||||||| ||||||| |||||||||| ||||| |  ||||||||||||| ||||||||    
T  13699667 aagtattggttctgaaagaacaaaagagagcaatggaatttgc--aaaggaagcttatgttgcaaga 13699603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 16304997 - 16305060
Alignment:
Q  32 aagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaag 97  Q
    |||||| ||||||| | |||||||||||||||||| |||||||  ||||||||||| | |||||||    
T  16304997 aagtattggttctggaagaacaaatgagagcaatgtaatttac--aaaggaagcttgtgttgcaag 16305060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 14073061 - 14073004
Alignment:
Q  30 tcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagctt 87  Q
    ||||| ||| |||||| | |||||||||||||||||| ||| ||| ||||||||||||    
T  14073061 tcaagcatatgttctggaagaacaaatgagagcaatggaatctacaaaaaggaagctt 14073004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 15647863 - 15647814
Alignment:
Q  287 gagcaacgactattttagaggaattagaagacattggatgcttatccact 336  Q
    |||||| |||||||| |||||||||||| | | |||||||||||||||||    
T  15647863 gagcaatgactatttaagaggaattagatggctttggatgcttatccact 15647814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 17762125 - 17762194
Alignment:
Q  265 ttgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatcca 334  Q
    ||||| ||| ||| ||||| | ||||||||| |||||| ||||||||||||| |||| |||| |||||||    
T  17762125 ttgtataaggaatagaagcttggagcaacgattattttggaggaattagaaggcatttgatgtttatcca 17762194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 19063445 - 19063514
Alignment:
Q  265 ttgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatcca 334  Q
    ||||| ||| ||| ||||| | ||||||||| |||||| ||||||||||||| |||| |||| |||||||    
T  19063445 ttgtataaggaatagaagcttggagcaacgattattttggaggaattagaaggcatttgatgtttatcca 19063514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 26 - 350
Target Start/End: Complemental strand, 7699 - 7375
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagattcaagacagattttgaagacaaagag 125  Q
    ||||||||||||  |||||||| ||||||||||| |||||  ||||||| |||||||||||| | |||||| ||| |||||| | | |||||| ||||||    
T  7699 taattcaagtatgagttctgaaagaacaaatgagggcaatagaatttacaaaaaggaagcttgtgttgcaatattgaagacaaagtctgaagaaaaagag 7600  T
Q  126 cgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaag 225  Q
    ||| |||| || |||| |||||| |||| ||||||||  ||||||||||| |||||||| ||||||||| || |||||| |||||||  || ||||||||    
T  7599 cgtctgaacaccatcaaaagctggctactagaagctggtgtcatcagagagtctgaagagcctcagaagctgaagttcaacagagtctaaagactggaag 7500  T
Q  226 ctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggat 325  Q
    ||  ||||||||||||||||||||| | ||| ||||| |||| ||||| |||||||||||||| || ||||||||| ||| |||||||||  ||||||||    
T  7499 ctagagttagttaaaagttgttattttgaattcatatgattgcagaaggaatggaagcctagaacagcgactatttcagaagaattagaaagcattggat 7400  T
Q  326 gcttatccactaaagagcgcaggaa 350  Q
    ||||||||| | |||||||||||||    
T  7399 gcttatccattgaagagcgcaggaa 7375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 26 - 375
Target Start/End: Original strand, 18171800 - 18172154
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat------tcaaga---cagattttgaa 116  Q
    |||||||||||||||||||| | |||||||| ||||||||| ||||||| ||||| |||||| | ||| || ||      | ||||   |||| | ||||    
T  18171800 taattcaagtataggttctggaagaacaaataagagcaatggaatttacaaaaagcaagcttgtgttgaaatatagagtctgaagaaggcagagtctgaa 18171899  T
Q  117 gacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccga 215  Q
    |||||||| ||| |||    ||||||||| ||||||| ||||||||||||||||||||| | |||| |||| ||| ||| |||||||||| ||| || |     
T  18171900 gacaaagaacgtctga----tatcagaagttgtctactagaagctgacgtcatcagagagtgtgaataaccatcaaaagctggagttcattagaatctgg 18171995  T
Q  216 aaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaa 315  Q
    | |||| |||||||||||||||||| ||||||||||| ||||||||| |||| |||||  |||||||||||||||||||||||||| |||||||||||||    
T  18171996 agactgaaagctgaagttagttaaatgttgttattctgaatgcatatgattgcagaaggtatggaagcctagagcaacgactatttcagaggaattagaa 18172095  T
Q  316 gacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||  ||||||||||| | ||||  ||||| |||||||||||||||||||| |||||    
T  18172096 gacattaaatgcttatccattgaagactgcagg-aaaaggacatagtacaattgtacaac 18172154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 26 - 375
Target Start/End: Original strand, 23005822 - 23006177
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat------tcaaga---cagattttgaa 116  Q
    ||||||||||||||| |||| | ||||| |||||||||||| ||||||| ||||| |||||| | |||||||||      | ||||   |||| | ||||    
T  23005822 taattcaagtataggatctggaagaacacatgagagcaatggaatttacaaaaagaaagcttgtgttgcaagatagagtttgaagaaggcagagtctgaa 23005921  T
Q  117 gacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccga 215  Q
    ||||| ||| || |||| ||||||||||| |||| |||||||||||||||||||| ||| ||| || |||| ||| ||| |||||||||   |||||       
T  23005922 gacaaggagtgtctgaacactatcagaagttgtcgaccagaagctgacgtcatcaaagagtctaaataaccatcaaaagctggagttca---gagtctag 23006018  T
Q  216 aaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaa 315  Q
    | ||| ||||||||||||||||||| ||||||||||| ||||||||| |||| | |||  |||||||||||||| ||||||||||| |||||||||||||    
T  23006019 agactagaagctgaagttagttaaatgttgttattctgaatgcatatgattgcaaaaggtatggaagcctagaggaacgactatttcagaggaattagaa 23006118  T
Q  316 gacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    | |||| |||||||||||| | ||||| ||| |||||| ||||||||||||||| |||||    
T  23006119 ggcattagatgcttatccattgaagagtgcaagaaaaa-gacatagtacaattgtacaac 23006177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 26 - 375
Target Start/End: Complemental strand, 23782544 - 23782189
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat------tcaaga---cagattttgaa 116  Q
    ||||||||||||||| |||| | ||||| |||||||||||| ||||||| ||||| |||||| | |||||||||      | ||||   |||| | ||||    
T  23782544 taattcaagtataggatctggaagaacacatgagagcaatggaatttacaaaaagaaagcttgtgttgcaagatagagtttgaagaaggcagagtctgaa 23782445  T
Q  117 gacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccga 215  Q
    ||||| ||| || |||| ||||||||||| |||| |||||||||||||||||||| ||| ||| || |||| ||| ||| |||||||||   |||||       
T  23782444 gacaaggagtgtctgaacactatcagaagttgtcgaccagaagctgacgtcatcaaagagtctaaataaccatcaaaagctggagttca---gagtctag 23782348  T
Q  216 aaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaa 315  Q
    | ||| ||||||||||||||||||| ||||||||||| ||||||||| |||| | |||  |||||||||||||| ||||||||||| |||||||||||||    
T  23782347 agactagaagctgaagttagttaaatgttgttattctgaatgcatatgattgcaaaaggtatggaagcctagaggaacgactatttcagaggaattagaa 23782248  T
Q  316 gacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    | |||| |||||||||||| | ||||| ||| |||||| ||||||||||||||| |||||    
T  23782247 ggcattagatgcttatccattgaagagtgcaagaaaaa-gacatagtacaattgtacaac 23782189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 154 - 369
Target Start/End: Original strand, 24718642 - 24718857
Alignment:
Q  154 cagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattct 252  Q
    |||||| ||||||||||||||| ||||||||||| | ||||| ||||||||||||||||| ||| |||| |||||||||||||||||| ||| || ||||    
T  24718642 cagaagttgacgtcatcagagagtctgaagaaccattagaagctggagttcatcagagtctgaagactgtaagctgaagttagttaaatgttctttttct 24718741  T
Q  253 taatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaa 352  Q
     ||||||||| ||||  || | ||||||||||||| ||| || |||||| | |  ||||||||| ||||||||||||||||||| ||||| ||||| |||    
T  24718742 gaatgcatatgattgctgatggaatggaagcctagtgcagcggctatttcaaaataattagaaggcattggatgcttatccactgaagagtgcagg-aaa 24718840  T
Q  353 aggacatagtacaattg 369  Q
    |||||||||||||||||    
T  24718841 aggacatagtacaattg 24718857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 375
Target Start/End: Original strand, 24728465 - 24728676
Alignment:
Q  154 cagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattct 252  Q
    |||||| ||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||| || ||||    
T  24728465 cagaagttgacgtcatcagagagtctcaagaaccatcagaagctggagttcatcagagtctgaagactggaagctgaagttagttaaatgttctttttct 24728564  T
Q  253 taatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaa 352  Q
     |||||          ||||| ||||||| ||||| |||| | |||||| |||||||||||||| ||||||||||||||||||| ||||| ||||| |||    
T  24728565 gaatgc----------agaaggaatggaaacctagtgcaatggctatttcagaggaattagaaggcattggatgcttatccactgaagagtgcagg-aaa 24728653  T
Q  353 aggacatagtacaattgcacaac 375  Q
    ||||||||||||||||| |||||    
T  24728654 aggacatagtacaattgtacaac 24728676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 154 - 375
Target Start/End: Original strand, 10704462 - 10704671
Alignment:
Q  154 cagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattctt 253  Q
    ||||| |||||||||||||||| |||||||| || |||||| || ||||||||| |||| ||| ||||||||||| |||||||||||  |||||||| |     
T  10704462 cagaaactgacgtcatcagagagtctgaagatccccagaagctgaagttcatcaaagtctgaagactggaagctgcagttagttaaagtttgttattttg 10704561  T
Q  254 aatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaa 353  Q
    ||  ||            || ||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  ||||||| ||||||||    
T  10704562 aagaca------------aggaatagaagcctagagcaacgactattttaaaggaattagaagacattgaatgcttatccaccgaagagcgtaggaaaaa 10704649  T
Q  354 ggacatagtacaattgcacaac 375  Q
    || ||||||||||||| |||||    
T  10704650 gggcatagtacaattgtacaac 10704671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 375
Target Start/End: Complemental strand, 13145433 - 13145159
Alignment:
Q  101 caagacagattttgaagacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggag 200  Q
    ||||||||| | ||||||| || || |||||||||| ||||||||||| || ||||||||||||||||||| ||  ||| |||| ||||||||| || ||    
T  13145433 caagacagagtctgaagactaacagagtttgaagaccatcagaagctgactgccagaagctgacgtcatca-agcgtctaaagatcctcagaagctgaag 13145335  T
Q  201 ttcatcagagtccgaa-aactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactat 299  Q
    ||||| |||||| ||| ||||||||||||  |||| |||||  |||||  ||| ||  || ||||||| ||||| ||| |||||||   |||||||||||    
T  13145334 ttcattagagtctgaagaactggaagctgctgttacttaaagtttgtttctctaaagacacatcattgcagaaggaatagaagcctgatgcaacgactat 13145235  T
Q  300 tttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggac--atagtacaattgcacaac 375  Q
    || ||| |||||||||| ||||| ||||||||||||||||||| | ||  ||||||||  |||||||||||| |||||    
T  13145234 ttcagatgaattagaaggcattgaatgcttatccactaaagagagaag--aaaaggacatatagtacaattgtacaac 13145159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 375
Target Start/End: Original strand, 16462537 - 16462771
Alignment:
Q  138 atcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagtt 237  Q
    ||||||||| ||  ||||||||||||||||||| ||  | ||||||| | |||||| ||| || ||||||||    ||| | ||||||||||||||||||    
T  16462537 atcagaagcagttcaccagaagctgacgtcatcgga--agctgaagatcatcagaatttgaagatcatcagaagttgaagattggaagctgaagttagtt 16462634  T
Q  238 aaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccacta 337  Q
    |||  |||||||||| |||| | ||||||  ||||| ||| ||||||| ||| |||| |||  | ||||||||| |||| |||||||||||||||||||     
T  16462635 aaattttgttattctgaatggacatcattacagaaggaatagaagcctggagaaacggctaaatcagaggaatttgaaggcattggatgcttatccactg 16462734  T
Q  338 aagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
     |||||||||| |||||||||||||||||||| |||||    
T  16462735 gagagcgcagg-aaaaggacatagtacaattgtacaac 16462771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 9192868 - 9192698
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat----tc-----aagacagattttgaa 116  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||| | ||| |||||    ||     |||||| | | ||||    
T  9192868 taattcaagtataggttttgaaggaacaaatgagagcaatgaaatttacaaaaaggaaacttgtgttgtaagatagaatctgaagaagacaaagtctgaa 9192769  T
Q  117 gacaaagagcgtttgaagactatcagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacc 187  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  9192768 gacaaagagcgtctgaagaccatcagaagctgtgtaccagaagctgacgtcatcagagagtctaaagaacc 9192698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 222 - 375
Target Start/End: Complemental strand, 19876013 - 19875861
Alignment:
Q  222 gaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacatt 321  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||| ||||| || ||||| || ||| || | |||||| |||||||||| ||| || |    
T  19876013 gaagctgaagttagttaaatgttgttattct-aatgcatatgattgcagaaggaacggaagtctggagtaatggctatttcagaggaattacaaggcaat 19875915  T
Q  322 ggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||| |||||    
T  19875914 ggatgcttatccactaaagagcgctcgaaaaaggatatagtacaattgtacaac 19875861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 342
Target Start/End: Original strand, 17445593 - 17445747
Alignment:
Q  188 tcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctag 287  Q
    ||||||||||  ||||||||||  |  || ||||||||||||||||||||||| ||||||||| | |||||  ||||||| ||||| ||||  ||||| |    
T  17445593 tcagaagttgaggttcatcagaagctaaagactggaagctgaagttagttaaatgttgttattttgaatgctcatcattggagaaggaatgagagcctgg 17445692  T
Q  288 agcaacgactattttagaggaattagaagacattggatgcttatccactaaagag 342  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||| || |||||    
T  17445693 agcaacgactatttcagaggaattagaagacattgaatgctgatccgctgaagag 17445747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 222 - 375
Target Start/End: Complemental strand, 24398838 - 24398686
Alignment:
Q  222 gaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacatt 321  Q
    ||||||| |||||||||||  |||||||||| ||  || ||||||| |||||  || ||||||| ||||||||||||||||| |||||||||||| ||||    
T  24398838 gaagctgcagttagttaaagtttgttattctcaagacacatcattgcagaaggtatagaagcctggagcaacgactattttaaaggaattagaaggcatt 24398739  T
Q  322 ggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||||||||||| | ||||||| | ||||||| |||||||| ||| |||||    
T  24398738 ggatgcttatccactgatgagcgcatg-aaaaggatatagtacagttgtacaac 24398686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 367
Target Start/End: Complemental strand, 23231443 - 23231218
Alignment:
Q  140 cagaagctgtctaccagaagctgacgtcatcagagaatctgaagaacctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaa 239  Q
    ||||||||| || ||||||||||||||||||| ||  ||||||||  || ||||| || |||||||||||||| ||| |||   || || ||||||||||    
T  23231443 cagaagctgactgccagaagctgacgtcatca-agcgtctgaagattctaagaagctgaagttcatcagagtctgaagactaatagttgtagttagttaa 23231345  T
Q  240 aagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaa 339  Q
    |  |||||||||| ||  |||||||  ||||||  |||  ||||||  |||||    ||||| |||| ||||||||| ||||||||||||||||||  ||    
T  23231344 agtttgttattctaaagacatatcaccgtagaatgaataaaagcctgaagcaattgatatttcagagaaattagaaggcattggatgcttatccacggaa 23231245  T
Q  340 gagcgcaggaaaaaggacatagtacaat 367  Q
    ||||||||| ||||||||||||||||||    
T  23231244 gagcgcagg-aaaaggacatagtacaat 23231218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 375
Target Start/End: Complemental strand, 32336000 - 32335848
Alignment:
Q  222 gaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacatt 321  Q
    |||||| |||||||||||| |||| |||||| ||||| ||| |||| ||||| ||||||||||| ||||||||||||||| ||| ||||| ||||  |||    
T  32336000 gaagctcaagttagttaaatgttgatattct-aatgcttatgattgcagaaggaatggaagcctggagcaacgactatttcagaagaatttgaagggatt 32335902  T
Q  322 ggatgcttatccactaaagagcgcaggaaaaaggac-atagtacaattgcacaac 375  Q
     |||||||||||||| |||||| | || || ||||| |||||||||||| |||||    
T  32335901 agatgcttatccactgaagagctctgg-aataggacgatagtacaattgtacaac 32335848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 154 - 290
Target Start/End: Original strand, 14325276 - 14325413
Alignment:
Q  154 cagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattct 252  Q
    ||||||||||| |||||||| | ||| ||||||| ||||||| |  ||||||||| |||| ||| ||| ||||||||||||||||||| |||||||||||    
T  14325276 cagaagctgacatcatcagaaagtctaaagaaccatcagaagctaaagttcatcaaagtctgaagactagaagctgaagttagttaaatgttgttattct 14325375  T
Q  253 taatgcatatcattgtagaagaaatggaagcctagagc 290  Q
     ||| ||||| |||| ||||  ||||||||||| ||||    
T  14325376 gaatacatatgattgcagaatgaatggaagcctggagc 14325413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 154 - 290
Target Start/End: Original strand, 14418286 - 14418423
Alignment:
Q  154 cagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattct 252  Q
    ||||||||||| |||||||| | ||| ||||||| ||||||| |  ||||||||| |||| ||| ||| ||||||||||||||||||| |||||||||||    
T  14418286 cagaagctgacatcatcagaaagtctaaagaaccatcagaagctaaagttcatcaaagtctgaagactagaagctgaagttagttaaatgttgttattct 14418385  T
Q  253 taatgcatatcattgtagaagaaatggaagcctagagc 290  Q
     ||| ||||| |||| ||||  ||||||||||| ||||    
T  14418386 gaatacatatgattgcagaatgaatggaagcctggagc 14418423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 375
Target Start/End: Complemental strand, 21035167 - 21035023
Alignment:
Q  230 agttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgctt 329  Q
    |||| |||||| ||||||||||| | ||| ||| |||| ||||| ||||||||| | |||||||||||| || | ||||||| |||  ||||||||||||    
T  21035167 agtttgttaaatgttgttattctca-tgcttatgattgcagaaggaatggaagcttggagcaacgactaattcataggaatttgaaagcattggatgctt 21035069  T
Q  330 atccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    || ||||||||| |||||||||| ||  | |||||||||| |||||    
T  21035068 attcactaaagaacgcaggaaaagggtaacagtacaattgtacaac 21035023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 24718535 - 24718608
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat 99  Q
    |||||||||||||||||||| | ||||||||||||||||| |||||||| |||||||||||| | |||||||||    
T  24718535 taattcaagtataggttctggaagaacaaatgagagcaataaaatttacaaaaaggaagcttgtgttgcaagat 24718608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 24728334 - 24728407
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaagat 99  Q
    ||||||||||||||||| || | ||||||||||||||||| |||||||| |||||||||||| | |||||||||    
T  24728334 taattcaagtataggttgtggaagaacaaatgagagcaataaaatttacaaaaaggaagcttgtgttgcaagat 24728407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 17867661 - 17867598
Alignment:
Q  305 aggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattg 369  Q
    |||||||||||| ||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  17867661 aggaattagaaggcattggatgcttatccactgaagagcgcagg-gaaaggacatagtacaattg 17867598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 17877444 - 17877381
Alignment:
Q  305 aggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattg 369  Q
    |||||||||||| ||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  17877444 aggaattagaaggcattggatgcttatccactgaagagcgcagg-gaaaggacatagtacaattg 17877381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 18026792 - 18026854
Alignment:
Q  279 gaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaaga 341  Q
    ||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  18026792 gaagcctggagcaacaactatttcagaggaattagaaggcattggatgcttatccactgaaga 18026854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 25930622 - 25930546
Alignment:
Q  255 atgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttat 331  Q
    |||| |||||||| ||||| ||| ||||||| |||||||| ||| || ||||||||| |||| ||||||||||||||    
T  25930622 atgcctatcattgcagaaggaatagaagcctggagcaacggctaattcagaggaatttgaagtcattggatgcttat 25930546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 26185823 - 26185756
Alignment:
Q  290 caacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggaca 358  Q
    ||||| |||||| ||| |||||||||| |||| |||||||||||||||||||| ||| |||||||||||    
T  26185823 caacggctatttcagatgaattagaaggcattagatgcttatccactaaagagtgca-gaaaaaggaca 26185756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 17445472 - 17445544
Alignment:
Q  27 aattcaagtataggttctgaatgaacaaatgagagcaat-gaaatttacgaaaaggaagcttattttgcaaga 98  Q
    |||||||| ||| |||||| | ||||||||||||||||| ||| ||||| |||||||||||| | ||||||||    
T  17445472 aattcaagcatatgttctggaagaacaaatgagagcaatagaattttacaaaaaggaagcttgtgttgcaaga 17445544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 31127368 - 31127440
Alignment:
Q  279 gaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaa 351  Q
    ||||||| || |||||  ||||| |||||||||| ||| ||||||||||||| ||||| ||||||||| ||||    
T  31127368 gaagcctggaacaacgtatatttcagaggaattataaggcattggatgcttaaccactgaagagcgcatgaaa 31127440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 19625951 - 19625881
Alignment:
Q  260 tatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttat 331  Q
    |||||||||| ||||| ||||||| | |||||||| |||| ||||||||||| |||| ||||| ||||||||    
T  19625951 tatcattgtataagaa-tggaagcttggagcaacggctatattagaggaatttgaaggcattgaatgcttat 19625881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 23298311 - 23298261
Alignment:
Q  36 ataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagctt 87  Q
    |||||||||||| |||||||||||||||||| ||| ||| ||||||||||||    
T  23298311 ataggttctgaa-gaacaaatgagagcaatggaatctacaaaaaggaagctt 23298261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 16462430 - 16462480
Alignment:
Q  36 ataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagct 86  Q
    |||||||||| | ||||||||||||| |||| ||||||| |||||||||||    
T  16462430 ataggttctggaagaacaaatgagaggaatggaatttacaaaaaggaagct 16462480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 368
Target Start/End: Original strand, 30451557 - 30451650
Alignment:
Q  275 aatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggac-atagtacaatt 368  Q
    |||||||||||  || ||||  ||||| | || |||| |||| ||||||||||||||||||| ||||||||| ||||||| || |||||||||||    
T  30451557 aatggaagcctgaagtaacggttatttcatagaaatttgaaggcattggatgcttatccactgaagagcgca-gaaaaagaacaatagtacaatt 30451650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 12348493 - 12348436
Alignment:
Q  30 tcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagctt 87  Q
    ||||| |||||||||  | |||||||||||||||||||||| ||  ||||||||||||    
T  12348493 tcaagcataggttctcgaagaacaaatgagagcaatgaaatctagaaaaaggaagctt 12348436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 25930805 - 25930744
Alignment:
Q  36 ataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaag 97  Q
    ||||||| |||| |||||||| ||||||||| ||| ||| |||||||||||||  |||||||    
T  25930805 ataggttttgaaagaacaaataagagcaatggaatctacaaaaaggaagcttaagttgcaag 25930744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 32336147 - 32336081
Alignment:
Q  30 tcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||| |||||||||| | ||| |||||||||||||| |||||||  ||||||||||| | ||||||||    
T  32336147 tcaagcataggttctggaagaaaaaatgagagcaatggaatttac--aaaggaagcttgtgttgcaaga 32336081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 7812372 - 7812304
Alignment:
Q  30 tcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    ||||| |||||||||| | |||||||||| ||||||  ||| ||| |||||||||||| | ||||||||    
T  7812372 tcaagcataggttctggaagaacaaatgaaagcaattgaatctacaaaaaggaagcttgtgttgcaaga 7812304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 32336065 - 32336029
Alignment:
Q  138 atcagaagctgtctaccagaagctgacgtcatcagag 174  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  32336065 atcagaagctgtctatcagaagctgaagtcatcagag 32336029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 186 - 375
Target Start/End: Complemental strand, 20283 - 20095
Alignment:
Q  186 cctcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcct 285  Q
    ||||||||| || ||||||  |||||| ||| ||||||||||| ||||||||||||||||||||| | ||  ||||| |||| ||||| |||||||||||    
T  20283 cctcagaagctgaagttcaatagagtctgaagactggaagctggagttagttaaaagttgttattttgaactcatatgattgcagaaggaatggaagcct 20184  T
Q  286 agagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||||||||||||||| ||| |||||||||  ||||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||    
T  20183 agagcaacgactatttcagaagaattagaaagcattggatgcttatccattgaagagcgcagg-aaaaggacatagtacaattgtacaac 20095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 154 - 375
Target Start/End: Complemental strand, 3215 - 2994
Alignment:
Q  154 cagaagctgacgtcatcagagaatctgaagaacc-tcagaagttggagttcatcagagtccgaaaactggaagctgaagttagttaaaagttgttattct 252  Q
    ||||||||||||||| |||||| ||||||||||| |||| || | ||||||||||||||| ||| | ||||||||||| | |||| ||||||||||||||    
T  3215 cagaagctgacgtcagcagagagtctgaagaaccatcaggagctagagttcatcagagtctgaagattggaagctgaaatcagttcaaagttgttattct 3116  T
Q  253 taatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaa 352  Q
     ||  |  |||||||||||||  |||||||| |  |||||||||| |||||||||||||||||  |||||||||||||||||||||||||| || | |||    
T  3115 gaagtctgatcattgtagaaggtatggaagcttgaagcaacgactgttttagaggaattagaatgcattggatgcttatccactaaagagctcaag-aaa 3017  T
Q  353 aggacatagtacaattgcacaac 375  Q
    |||||||||| |||||| |||||    
T  3016 aggacatagtgcaattgtacaac 2994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 3338 - 3280
Alignment:
Q  6 aggaccatagtcaaaaattataattcaagtataggttctgaatgaacaaatgagagcaa 64  Q
    ||||||||||||||||||||||| |||||||| ||||||||| |||||||  |||||||    
T  3338 aggaccatagtcaaaaattataagtcaagtattggttctgaaagaacaaaatagagcaa 3280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 222 - 363
Target Start/End: Complemental strand, 59736 - 59597
Alignment:
Q  222 gaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacatt 321  Q
    |||| |||||||||||||| | ||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  59736 gaagatgaagttagttaaatgatgttattct-aatgcatatgattgtagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcatt 59638  T
Q  322 ggatgcttatccactaaagagcgcaggaaaaaggacatagta 363  Q
    ||||| ||||||| | ||||||| | ||||||||||||||||    
T  59637 ggatggttatccaatgaagagcgta-gaaaaaggacatagta 59597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 222 - 375
Target Start/End: Complemental strand, 31803 - 31651
Alignment:
Q  222 gaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacatt 321  Q
    ||||| |||||||||||||  |||||||| | ||  || ||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||||||||  |||    
T  31803 gaagccgaagttagttaaagtttgttattgtcaagacacatcattgcagaaggaatagaagcctggagcaacgactattttaaaggaattagaaggaatt 31704  T
Q  322 ggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    ||||||||||||||| ||||||||| | ||||||| |||||||||||| |||||    
T  31703 ggatgcttatccactgaagagcgcatg-aaaaggatatagtacaattgtacaac 31651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 375
Target Start/End: Original strand, 3332 - 3486
Alignment:
Q  220 tggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagaca 319  Q
    ||||||||||||||||||||| ||| | |||||   ||   ||||| | ||||| ||| |||||||||||||| | |||||| |||||||||||||| ||    
T  3332 tggaagctgaagttagttaaatgttatcattctgtttgtgcatcatagaagaaggaatagaagcctagagcaatggctatttcagaggaattagaaggca 3431  T
Q  320 ttggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    || |||||||||||||||||| |  |||| ||||| |||||||||||||| |||||    
T  3432 ttcgatgcttatccactaaagggaacagg-aaaagaacatagtacaattgtacaac 3486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 2781 - 2730
Alignment:
Q  280 aagcctagagcaacgactattttagaggaattagaagacattggatgcttat 331  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||| |||||    
T  2781 aagcctggagcaacgactattttagaggaattggaaggcattggatacttat 2730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 4391 - 4296
Alignment:
Q  280 aagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| |||||||||| |   |||||||||||| |||||    
T  4391 aagcctggagcaacgactatttcagaggaattagaaggcatttgatgcttatccactgaagaacgcaggaaaatgacaatagtacaattgtacaac 4296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 4609 - 4548
Alignment:
Q  34 gtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaag 97  Q
    |||| |||||||||  ||||||||||||||||| || ||||  ||||||||||||| |||||||    
T  4609 gtattggttctgaaaaaacaaatgagagcaatggaaattac--aaaggaagcttatgttgcaag 4548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 497 - 431
Alignment:
Q  280 aagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgca 346  Q
    ||||||||||||||||| |||| |||||||||||||| ||||| || ||||| ||||||||||||||    
T  497 aagcctagagcaacgacaatttcagaggaattagaaggcattgaatacttattcactaaagagcgca 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 2357 - 2410
Alignment:
Q  288 agcaacgactattttagaggaattagaagacattggatgcttatccactaaaga 341  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  2357 agcaacgactattttagaggaattagaaggcattggatgcttacccactgaaga 2410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 4792 - 4720
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaaga 98  Q
    |||||||||||||||||||| | |||||||||||||||||| ||  ||| |||||||||| ||| ||||||||    
T  4792 taattcaagtataggttctggaagaacaaatgagagcaatggaaaatacaaaaaggaagcatatgttgcaaga 4720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 87088 - 87021
Alignment:
Q  218 actggaagctgaagttagttaaaagttgttattcttaatgcatatcattgtagaagaaatggaagcct 285  Q
    ||||||||||| ||||||||||||||| ||||||| ||| ||||| |||| ||||| |||||||||||    
T  87088 actggaagctggagttagttaaaagtttttattctgaattcatatgattgcagaaggaatggaagcct 87021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 9245 - 9329
Alignment:
Q  280 aagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaatt 368  Q
    ||||||| |||||||  |||||  ||||||||||||| ||||||||||   |||||| ||||||||||| |||||||||||||||||||    
T  9245 aagcctaaagcaacggatatttctgaggaattagaaggcattggatgc---tccactgaagagcgcagg-aaaaggacatagtacaatt 9329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 9045 - 9108
Alignment:
Q  32 aagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagcttattttgcaag 97  Q
    |||||| ||||||||| ||||||| ||||||||||||||||  | ||||||||||||| |||||||    
T  9045 aagtattggttctgaaagaacaaaagagagcaatgaaattt--gcaaaggaagcttatgttgcaag 9108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 112325 - 112241
Alignment:
Q  280 aagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaatt 368  Q
    ||||||| |||||||  |||||  ||||||||||||| ||||||||||   |||||| ||||||||||| |||||||||||||||||||    
T  112325 aagcctaaagcaacggatatttctgaggaattagaaggcattggatgc---tccactgaagagcgcagg-aaaaggacatagtacaatt 112241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 2375 - 2436
Alignment:
Q  26 taattcaagtataggttctgaatgaacaaatgagagcaatgaaatttacgaaaaggaagctt 87  Q
    ||||||||| |||||||||| | |||||||||||||||||||||| ||| ||||| ||||||    
T  2375 taattcaagcataggttctggaagaacaaatgagagcaatgaaatctacaaaaagtaagctt 2436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 16417 - 16470
Alignment:
Q  288 agcaacgactattttagaggaattagaagacattggatgcttatccactaaaga 341  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||    
T  16417 agcaacgactattttagagaaattagaaggcattggatgcttacccactgaaga 16470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 1827 - 1899
Alignment:
Q  280 aagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaa 352  Q
    ||||||| || || |||||||| ||||||| |||||| |||| ||| |||||||||||||||||||| |||||    
T  1827 aagcctaaagaaatgactatttcagaggaaatagaaggcattagatacttatccactaaagagcgcatgaaaa 1899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 416028 - 416102
Alignment:
Q  269 agaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttatccactaaagagc 343  Q
    ||||| ||| ||||||| ||||||||||||||| | | |||||||||| ||||||| | ||||| ||||||||||    
T  416028 agaaggaatagaagcctggagcaacgactatttcaaatgaattagaaggcattggacggttatctactaaagagc 416102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 850 - 773
Alignment:
Q  255 atgcatatcattgtagaagaaatg-gaagcctagagcaacgactattttagaggaattagaagacattggatgcttat 331  Q
    |||| |||||||| ||||| |||  ||||||| ||||||||||||||| |||| ||||  ||| ||||||||||||||    
T  850 atgcctatcattgcagaaggaataagaagcctggagcaacgactatttcagagaaattgaaaggcattggatgcttat 773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 3302 - 3350
Alignment:
Q  287 gagcaacgactattttagaggaattagaagacattggatgcttatccac 335  Q
    |||||| |||||||| ||||||||| |||| ||||||||||||||||||    
T  3302 gagcaatgactatttcagaggaatttgaaggcattggatgcttatccac 3350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 8198 - 8150
Alignment:
Q  288 agcaacgactattttagaggaattagaagacattggatgcttatccact 336  Q
    |||||||| ||||| |||||||||||||| ||||||||| |||||||||    
T  8198 agcaacgattatttcagaggaattagaaggcattggatgattatccact 8150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 4022 - 4105
Alignment:
Q  291 aacgactattttagaggaattagaagacattggatgcttatccactaaagagcgcaggaaaaaggacatagtacaattgcacaac 375  Q
    |||| |||||| | ||||||||||||  ||| |||| ||||||  | |||||||||| ||||||||||||||||||||| |||||    
T  4022 aacggctatttcataggaattagaaggaatttgatgtttatcctttgaagagcgcag-aaaaaggacatagtacaattgtacaac 4105  T

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Target: scaffold0035 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 29937 - 29867
Alignment:
Q  260 tatcattgtagaagaaatggaagcctagagcaacgactattttagaggaattagaagacattggatgcttat 331  Q
    |||||||| ||||||| | ||||||| |||||||||||| || ||| ||||| |||| ||||||||||||||    
T  29937 tatcattgcagaagaa-tagaagcctggagcaacgactaattcagatgaattggaaggcattggatgcttat 29867  T

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Target: scaffold0201 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 19272 - 19236
Alignment:
Q  137 tatcagaagctgtctaccagaagctgacgtcatcaga 173  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  19272 tatcagaagctgtctactagaaactgacgtcatcaga 19236  T

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