View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_36 (Length: 362)

Name: NF1783_low_36
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_36
NF1783_low_36
[»] chr5 (2 HSPs)
chr5 (1-69)||(31557637-31557705)
chr5 (44-129)||(18138252-18138336)
[»] chr2 (1 HSPs)
chr2 (21-98)||(13526002-13526081)
[»] chr1 (2 HSPs)
chr1 (325-354)||(7839081-7839110)
chr1 (197-230)||(7839206-7839239)


Alignment Details
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 31557705 - 31557637
Alignment:
Q  1 tattttggccatttaacttgcaaatactagatattttgattaggttacaagctttagacattttagtca 69  Q
    |||||||| || |||||||  |||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  31557705 tattttggtcaattaacttaaaaatactagatactttgattaagttacaaactttagacattttagtca 31557637  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 18138336 - 18138252
Alignment:
Q  44 gttacaagctttagacattttagtcatttctattaaaaataaaaatgtcttaataacttataatctaagagactgaactgttcaac 129  Q
    ||||||| |||||||||||||||||||||||||||| |||  |||||| || || | || ||||||||||||| ||| ||||||||    
T  18138336 gttacaaactttagacattttagtcatttctattaagaatctaaatgt-tttatcatttgtaatctaagagacggaagtgttcaac 18138252  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 13526002 - 13526081
Alignment:
Q  21 caaatactagatattttgatt--aggttacaagctttagacattttagtcatttctattaaaaataaaaatgtcttaata 98  Q
    |||||||||||||||||||||  | ||||||| |||||||||||||| ||  | |||||||||||  |||||||||||||    
T  13526002 caaatactagatattttgattttaagttacaaactttagacattttaatctatcctattaaaaattgaaatgtcttaata 13526081  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 7839110 - 7839081
Alignment:
Q  325 gcaaatcaagcgccccccgttgagtattat 354  Q
    ||||||||||||||||||||||||||||||    
T  7839110 gcaaatcaagcgccccccgttgagtattat 7839081  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 7839239 - 7839206
Alignment:
Q  197 gactttagagatcaaaatcagatctaacaataac 230  Q
    |||||| |||||||||||||||||||||||||||    
T  7839239 gacttttgagatcaaaatcagatctaacaataac 7839206  T

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