View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_37 (Length: 358)
Name: NF1783_low_37
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 38213981 - 38213635
Alignment:
| Q |
1 |
tgattctgggttgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatctataattactgcaacgatctt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213981 |
tgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatctataattactgcaacgatctt |
38213882 |
T |
|
| Q |
101 |
aagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatc-----ttaatttg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38213881 |
aagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatcttattttaatttg |
38213782 |
T |
|
| Q |
196 |
ttatgattcttttattttatatattcctctata-tattttggtgtctatcttagataacacgtgatcaaataaatcaaattctttgtagtttgtatcact |
294 |
Q |
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|||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |
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| T |
38213781 |
ttatgattctttgattttatatattcctctatatttttttggtgtctatcttagataacatgtgatcaaataaatcacattctttgtagtttgtaccact |
38213682 |
T |
|
| Q |
295 |
tccttatcagttttcggtatattgagaacactatatataccctgttc |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213681 |
tccttatcagttttcggtatattgagaacactatatataccctgttc |
38213635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 38218200 - 38217913
Alignment:
| Q |
1 |
tgattctgggttgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatctataattactgcaacgatctt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218200 |
tgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatctataattactgcaacgatctt |
38218101 |
T |
|
| Q |
101 |
aagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatc-----ttaatttg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38218100 |
aagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagccatcttattttaatttg |
38218001 |
T |
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| Q |
196 |
ttatgattcttttattttatatattcctctata-tattttggtgtctatcttagataacacgtgatcaaataaatcaaattctttgta |
282 |
Q |
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|||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |
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| T |
38218000 |
ttatgattctttgattttatatattcctctatatttttttggtgtctattttagatagcacatgatcaaataaatcaaattctttgta |
38217913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 42991522 - 42991666
Alignment:
| Q |
1 |
tgattctgggttgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatctataattactgcaacgatctt |
100 |
Q |
| |
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|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||| |
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| T |
42991522 |
tgattctgcattgcagagcaacgagcttgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatatataattactgcaacgatctt |
42991621 |
T |
|
| Q |
101 |
aagcgattcccagaaggtattcctgctgagtgtaagcgtccaagg |
145 |
Q |
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| T |
42991622 |
aagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
42991666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 35018234 - 35018348
Alignment:
| Q |
20 |
aatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatctataattactgcaacgatcttaagcgattcccagaaggta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| || || || |||||||||||||||||| ||||| |
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| T |
35018234 |
aatgagcttgatgcttatggtagaagaagattgagatgggttcaaaagtatttcatgatttataactattgtaatgatcttaagcgattcccacaaggtg |
35018333 |
T |
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| Q |
120 |
ttcctgctgagtgta |
134 |
Q |
| |
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|||||| |||||||| |
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| T |
35018334 |
ttcctgttgagtgta |
35018348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 42993602 - 42993697
Alignment:
| Q |
188 |
ttaatttgttatgattcttttattttatatattcctctatatatttt-ggtgtctatcttagataacacgtgatcaaataaatcaaattctttgta |
282 |
Q |
| |
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||||||| |||||||||||| |||| ||| ||||||| ||| |||| ||||||| | ||| |||||| |||| ||||||||||||||||||||| |
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| T |
42993602 |
ttaatttattatgattctttgatttactatcttcctctgtatttttttggtgtctgttttatataacagatgatgaaataaatcaaattctttgta |
42993697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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