View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_38 (Length: 345)
Name: NF1783_low_38
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 79 - 298
Target Start/End: Original strand, 35502209 - 35502429
Alignment:
| Q |
79 |
gttttgatacgagaaacaaataccacacaccctaattttgaaaatatttacaaaacaaatagataattagaatgctaataaagataatcataataattat |
178 |
Q |
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| T |
35502209 |
gttttgatacgagaaacaaataccaaacaccctaattttgaaaatatttacaaaacaaatagataattagaatgctaataacgataatcataataattag |
35502308 |
T |
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| Q |
179 |
ggattagcgatgaataaagagaaagaaaatagtaaaataaattaggg-nnnnnnncttaattacgaaaagtttgagtgatgcatgtaatgtgaaatcgag |
277 |
Q |
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| T |
35502309 |
ggattagcgatgaataaagagaaagaaaatagtaaaataaattagggttttttttcttaattacgaaaagtttgagtgatgcatgtaatgtgaaatcgag |
35502408 |
T |
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| Q |
278 |
aaaacgaaaatggaagattct |
298 |
Q |
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| T |
35502409 |
aaaacgaaaatggaagattct |
35502429 |
T |
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