View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_4 (Length: 796)

Name: NF1783_low_4
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_4
NF1783_low_4
[»] chr4 (3 HSPs)
chr4 (281-779)||(43101721-43102227)
chr4 (24-133)||(43101214-43101318)
chr4 (141-210)||(43101579-43101648)


Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 281 - 779
Target Start/End: Original strand, 43101721 - 43102227
Alignment:
Q  281 caatcaatttgacagaagacaatgtctcaagtaaattctctctcaacaactcattttcacgcaatcaacaatagccatcacattaagcatgcataggtgg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43101721 caatcaatttgacagaagacaatgtctcaagtaaattctctctcaacaactcattttcacgcaatcaacaatagccatcacattaagcatgcataggtgg 43101820  T
Q  381 gaaa----------attttgaaaattggagaccgaaaccaggaatctaaaaatagtagccaattgatatatctttcaaactaaacttgatctaatggtgt 470  Q
    ||||          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43101821 gaaattttttaaatattttgaaaattggagaccgaaaccaggaatctaaaaatagtagccatttgatatatctttcaaactaaacttgatctaatggtgt 43101920  T
Q  471 aaaagtgcacaaccaacagacccttcatccagagagagtaaatgttaaaagacaactacctcttgatgcaacattatcctgaaaagctgtaaatgaaata 570  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43101921 aaaagtgcacaaccaacagacccttcatccagag--agtaaatgttaaaagacaactacctcttgatgcaacattatcctgaaaagctgtaaatgaaata 43102018  T
Q  571 agaccaactttttacaatgaccgaagtaacaggaacctcagtgaaatgattctagaagaaaaatgtcaagtaaaagagcaaatggaaaggaccatgtcaa 670  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43102019 agaccaactttttacaatgaccgaagtaacagaaacctcagtgaaatgattctagaagaaaaatgtcaagtaaaagagcaaatggaaaggaccatgtcaa 43102118  T
Q  671 acaatcccagattatcccatcttcaatgggaggacaacatgccctgggtagtttagctagacatctggggcagaggaatcaaatgatggtagaagccacc 770  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43102119 acaatcccagattatcccatcttcaatgggaggactacatgccctgggtagtttagctagacatctggggcagaggaatcaaatgatggtagaagccacc 43102218  T
Q  771 ccttggtct 779  Q
    |||||||||    
T  43102219 ccttggtct 43102227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 43101214 - 43101318
Alignment:
Q  24 cgaattttctttcctcaaccaacatgtttattatgagtaaaatttgcattatatgcatctttgaaaaagagcagctctccagagacgggggtattccaaa 123  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||  ||||||||||||    
T  43101214 cgaattttctttcctcaaccaacatgtttattatgagaaaaatttgcattatatgcatctttgaaaaag---agctctccagagac--gggtattccaaa 43101308  T
Q  124 ccacatgatt 133  Q
    ||| ||||||    
T  43101309 ccatatgatt 43101318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 43101579 - 43101648
Alignment:
Q  141 acaaagaagacgaaatgtaactattaattagcttatagtctacctaaatctgatctacttaatagtctac 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43101579 acaaagaagaagaaatgtaactattaattagcttatagtctacctaaatctgatctacttaatagtctac 43101648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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