View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_42 (Length: 340)
Name: NF1783_low_42
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 43624313 - 43623985
Alignment:
| Q |
1 |
gcttaaacgcaatgagtttatgacctataaattgtaggcaaannnnnnncttaagcgttcaacgaaacgcacatatcatgcatggagaaataatttcaat |
100 |
Q |
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| T |
43624313 |
gcttaagcgcagtgagtttatgacctataaattgtaggcaaaattttttcttaggcgttcaacgaaacgcatatatcatgcattgagaaataatttcaat |
43624214 |
T |
|
| Q |
101 |
atagtctacaacatattaaatgtttatgaaacattatctgagttatacttatgaaatatatatat--------gggataaaatccacgatcatatatatt |
192 |
Q |
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| T |
43624213 |
atagtctacaacatattaaatgtttatgcaacatcatctgagttgtacttatgaaatatatatatatatatatgggataatatccacgatcatatatatt |
43624114 |
T |
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| Q |
193 |
ttttacaatttcttttaatccaaaaaacatatataatccacattccacacgtagctcattttaaccggatgcctgttccaagtcttgtgaggctttttgt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43624113 |
ttttacaatttcttttaatccaaaaaacatatataatccacattccacacgtagctcattttaactggatgcctgttccaagtcttgtgaggctttttgt |
43624014 |
T |
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| Q |
293 |
gtttgctctctgctctttccccaaagcac |
321 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43624013 |
gtttgctctctgctctttccccaaagcac |
43623985 |
T |
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