View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_5 (Length: 749)
Name: NF1783_low_5
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 182 - 466
Target Start/End: Original strand, 33787925 - 33788208
Alignment:
| Q |
182 |
caagtgattagcaaagagcacaaaaacatgtttcgtccgttttacaaggaaaatacatgtgtcggttaaatctcagatagagtgtggtctgcgtgacaca |
281 |
Q |
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| T |
33787925 |
caagtgattagcaaagagcacagaaacatgtttcgtccgttttacaaggaaaatacatgtgtcggttaaatctcaggtagagtgtggtctgcgtgacaca |
33788024 |
T |
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| Q |
282 |
tagcctaaaatatgtaacatctgaccacatgcaattaatgaaaaaaccaaagtccaattgcttatgcttcacttcctacgagtttatatgtttaaattta |
381 |
Q |
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| T |
33788025 |
tagcctaaaatatgtaacatttgaccacatgcaattaatgaaaa-accaaagtccaattgcttatgcttcacttcttacgagtttatatgtttaaattta |
33788123 |
T |
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| Q |
382 |
tgataatgatatagttactgaaaaattaccgactactatataattaaacatattctaaagatatagttttaaactccttttaact |
466 |
Q |
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| T |
33788124 |
tgataatgatatagttactgaaaaattaccgactactatataattaaacatattttaaagatatagttttaaactccttttaact |
33788208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 452 - 742
Target Start/End: Original strand, 33788225 - 33788518
Alignment:
| Q |
452 |
aaactccttttaactgaaatatatggttacttccgagcc-gtataattgcgtacactaattcatttaaaccagaccacagcaacaattgtttaagtccct |
550 |
Q |
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| T |
33788225 |
aaactccttttaactgaaacatgtggttactttcgagcctgtataattgcgtacattaattcatttgaaccagaccacagtaatatgtgtttaattccct |
33788324 |
T |
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| Q |
551 |
taaccatttgattaagaatttgatctttgatttgttcgcatgaaaatatataatttaaaagagatcaacctcttaaatagattctaattattacctacat |
650 |
Q |
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| T |
33788325 |
taaccatttgattaagaatttgatctttgattttttcgcatgaaaatatataatttaaaagagatcaacctcttaaatagattataattattacctacat |
33788424 |
T |
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| Q |
651 |
aaatcttttatagtggtgtattgggataccttggtttacc--agttgcgccaacacacacaaaatgagttctcttgaccattagtttcatatca |
742 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
33788425 |
aaatcttttatagtggtgtattgggataccttggtttacccaagttgcgctaacacacacaagacgagttctcttgaccattagtttcatatca |
33788518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 33787763 - 33787884
Alignment:
| Q |
16 |
gttatatgttgtaattgtaactgcatgtaattgattgttaaatctggacggtccaaattctgacctaaattaattacttcatacaaagtaaaacaacgac |
115 |
Q |
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| T |
33787763 |
gttatatgttgtaattgtaactgcatgtaattgattgttaaatctggacggtccaaattctgacctaaattaattacttcatacaaagtaaaacaacgac |
33787862 |
T |
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| Q |
116 |
tgtggaaatttgggcccttata |
137 |
Q |
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| T |
33787863 |
tgtggaaatttgggcccttata |
33787884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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