View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_50 (Length: 328)
Name: NF1783_low_50
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 27558782 - 27559097
Alignment:
| Q |
1 |
taataaaacaatcagctctacctgtgctacactcttctttctagccttagagatttctcaaagaattgaggtcttggatttaaattttcaattatacaat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27558782 |
taatcaaacaatcagctctacctgtgctacactcttctttctagccttagagatttctcaaagaattgaggtcttggatttaaattttcaattatacaat |
27558881 |
T |
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| Q |
101 |
ccagattcttctcattgcaattagaatcacacttatcagacaagtgtagcaggagaacagcagatgttataaacagtaataaaataaagaaaacaaagat |
200 |
Q |
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| T |
27558882 |
ccagattcttctcattgcaattcgaatcacacttatcagacaagtgtagcaggagaacagcagatgttataaacagtaataaaataaagaaaacaaagat |
27558981 |
T |
|
| Q |
201 |
aatattcaaaaaggtgtctgtttatgtatataactttttcgtgcaaaaataagatgtatacagaaattcattgaaattcgaccatgaagtcaaatatata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27558982 |
aatattcaaaaaggtgtctgtttatgtatataactttttcgtgcaaaaataagatgtatacagaaattcattgaaattcgaccatgaagtcaaatatata |
27559081 |
T |
|
| Q |
301 |
tgttcataactatctc |
316 |
Q |
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|||||||||||||||| |
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| T |
27559082 |
tgttcataactatctc |
27559097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 140 - 316
Target Start/End: Original strand, 27556050 - 27556226
Alignment:
| Q |
140 |
acaagtgtagcaggagaacagcagatgttataaacagtaataaaataaagaaaacaaagataatattcaaaaaggtgtctgtttatgtatataacttttt |
239 |
Q |
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| T |
27556050 |
acaagagttgcagcagaacagcagatggtataaacagtat--aaataatgaaaacaaagagaatacgaaaaaaggtggctgtttatatatataa-ttttt |
27556146 |
T |
|
| Q |
240 |
cgtgcaaaa-ataagatgtatacagaaattcattgaaattcgacc--atgaagtcaaatatatatgttcataactatctc |
316 |
Q |
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| T |
27556147 |
cgcgcaaaaaataagatatatatagaaattcattgaaatttgaccaaaaaaagtcaaatatctatattcataactatctc |
27556226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 27446509 - 27446434
Alignment:
| Q |
241 |
gtgcaaaaataagatgtatacagaaattcattgaaattcgaccatgaagtcaaatatatatgttcataactatctc |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| || |||||||| | ||||||||||| |||| |
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| T |
27446509 |
gtgcaaaaataagatgtatacagaaattcgttgaaattcgaccaaaaactcaaatatctctgttcataactgtctc |
27446434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 316
Target Start/End: Complemental strand, 27439187 - 27439025
Alignment:
| Q |
154 |
agaacagcagatgttataaacagtaataaaataaagaaaacaaagataatattc--aaaaaggtgtctgtttatgtatataactttttcgtgcaaaaata |
251 |
Q |
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|||| ||||||| | |||| ||||||||||| ||||||||| |||| | ||| ||||||| ||||||| | ||||||| |||| ||||||||||| |
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| T |
27439187 |
agaaaagcagatataataagcagtaataaaacaaagaaaaccaagagagaatttgtaaaaagggttctgtttctatatataatctttt-gtgcaaaaata |
27439089 |
T |
|
| Q |
252 |
agatgtatacagaaattcattgaaattcgaccatgaagtcaaatatatatgttcataactatctc |
316 |
Q |
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|||||||||||| | ||| |||||||| |||| |||||||| || | |||||||||||||||| |
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| T |
27439088 |
agatgtatacag-agttctttgaaatttgaccgacaagtcaaaaatctctgttcataactatctc |
27439025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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