View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_52 (Length: 316)
Name: NF1783_low_52
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 39996896 - 39996603
Alignment:
| Q |
8 |
ccaagaatatacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgt |
107 |
Q |
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| T |
39996896 |
ccaacaatatacttttaccagcccccaaaaaactggcttacctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgt |
39996797 |
T |
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| Q |
108 |
tttatccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgtt |
207 |
Q |
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| T |
39996796 |
tttatccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatctcgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgtt |
39996697 |
T |
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| Q |
208 |
aacattatccgaactaggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaagatatt |
301 |
Q |
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| T |
39996696 |
aacattatccgaactaggtgacttttcaccttcttcggaatattaccgttaccttatcccacacattgattacacactcccaatggaagatatt |
39996603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 53036708 - 53036988
Alignment:
| Q |
17 |
tacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttatccac |
116 |
Q |
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|||||||||| |||||| |||| |||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
53036708 |
tacttttaccgccccccacaaaaatggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaagtccttgtgccgttttatccac |
53036807 |
T |
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| Q |
117 |
ttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacattatc |
216 |
Q |
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| T |
53036808 |
tagccggtcgtttacaatggaaagaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaagcagaatcgtcgttaaccttatc |
53036907 |
T |
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| Q |
217 |
cgaactaggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaaga |
297 |
Q |
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|||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||| |||||| ||||| |
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| T |
53036908 |
cgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaattgaaga |
53036988 |
T |
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