View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_54 (Length: 300)
Name: NF1783_low_54
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_54 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 32270831 - 32271115
Alignment:
| Q |
1 |
aaacaaaaacggtgtatattaacacagttagagatgcctctttaacacaaggtgtgccaaaaagatcgctcaaattacaaagtgtctgtcaaatgattac |
100 |
Q |
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| T |
32270831 |
aaacaaaaacggtgtatattaacacagttagagacgcctctttaacataaggtgtgccaaaaagatcgctcaaattacaaagtgtctgtcaaatgattac |
32270930 |
T |
|
| Q |
101 |
ataaaagtccgatagccgatacccaaacaagaccaccattgctaactaccatatacaaaagtggcatttttagcattcaaccatcagtaagaatgaactt |
200 |
Q |
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| T |
32270931 |
ataaaagtccgatagctgatacccaaacaagaccaccattgctgactaccatatacgaaagtggcatttttagccttcaaccattagtaagaatgaaatt |
32271030 |
T |
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| Q |
201 |
ttaccttatctatgaactatctaacggaagtgtgaaagttatttaatattctattattacgttctttccacactagccaaacaca |
285 |
Q |
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| T |
32271031 |
ttaccttatctatgaactatctaacggaagtgtgaaagttattaaatattctattattacgttctttccacactaaacaaacaca |
32271115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 31752085 - 31751957
Alignment:
| Q |
5 |
aaaaacggtgtatattaacacagttagagatgcctctttaacacaaggtgtgccaaaaagatcgctcaaattacaaagtgtctgtcaaatgattacataa |
104 |
Q |
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| T |
31752085 |
aaaaatggtatatattaacacagtcagagatgcctctttagcacaagacgtactaaaaatgtcgttcaaaatacaaagtgtccgtcaaataattacaaaa |
31751986 |
T |
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| Q |
105 |
a-agtccgatagccgatacccaaacaagac |
133 |
Q |
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| T |
31751985 |
acagt-cgttaaccgatatccaaacaagac |
31751957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 36 - 285
Target Start/End: Complemental strand, 21394033 - 21393769
Alignment:
| Q |
36 |
gcctctttaacacaaggtgtgccaaaaagatcgctcaaattacaaagtgtctgtcaaatgattacataaa-agtccgatagccgatacccaaacaagacc |
134 |
Q |
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| T |
21394033 |
gcctctttagcacaaggcgtaccaaagaggacactcaaaatacagagtgtctgtcaaataattacaaaaacaagccgttagccgatacccaaacaagacc |
21393934 |
T |
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| Q |
135 |
ac------------cattgctaactaccatatacaaaagtggcatttttagcattcaaccat--cagtaagaatgaacttttaccttatctatgaactat |
220 |
Q |
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| T |
21393933 |
acgggtctgaccaccactgctaccgaccataaacaaaagtggcattattaaccctcaaccataccagtatgaatgaaatttaaccttatccataagctct |
21393834 |
T |
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| Q |
221 |
ctaacggaagtgtgaaagttatttaatattctattattacgttctttccacactagccaaacaca |
285 |
Q |
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| T |
21393833 |
gtaatgggagtgtgagaattattaaatagtctattattacgttcattccacactagccaaacaca |
21393769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 46216309 - 46216385
Alignment:
| Q |
131 |
gaccaccattgctaactaccatatacaaaagtggcatttttagcattcaaccatcagtaagaatgaacttttacctt |
207 |
Q |
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| T |
46216309 |
gaccaccactgctaactaccatgaacaaatgtggcattattagcccttaaccaccagtaggaatgaaatttaacctt |
46216385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 285
Target Start/End: Original strand, 26658588 - 26658742
Alignment:
| Q |
131 |
gaccaccattgctaactaccatatacaaaagtggcatttttagcattcaaccatcagtaagaatgaacttttaccttatctatgaactatctaacggaag |
230 |
Q |
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| T |
26658588 |
gaccaccactgctgacaaccatatactaaagtgacattattagctctcaaccaccagtataaatgaaattttaccttttccataagctccgtaatggaag |
26658687 |
T |
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| Q |
231 |
tgtgaaagttatttaatattctattattacgttctttccacactagccaaacaca |
285 |
Q |
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| T |
26658688 |
tgtatgaattattaaatagtctattattacgttcattccacactaaccaaacaca |
26658742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 6785 - 6835
Alignment:
| Q |
235 |
aaagttatttaatattctattattacgttctttccacactagccaaacaca |
285 |
Q |
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| T |
6785 |
aaagttattaaatattctattattacgttccttccagataagccaaacaca |
6835 |
T |
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