View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_57 (Length: 293)
Name: NF1783_low_57
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 25168480 - 25168221
Alignment:
| Q |
19 |
ataaaggctgctgaacgagctacagactttatgtttggatggtaagttcattaaaaagataaagcttatataattataccatccaaattaacacaattaa |
118 |
Q |
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| T |
25168480 |
ataaaggctgctgaacgagctacagactttatgtttggatggtaagttcattacaaagataaaacttatataattataccatccaaattaacacaattaa |
25168381 |
T |
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| Q |
119 |
ggagatatatatgataacttattcgatttctttgtttaattataggtttatggatcccttggccaatggagattatcctaaaaccatgagagcattagtc |
218 |
Q |
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| T |
25168380 |
ggagatttatatgataacttattcaatttctttgtttaattataggtttatggatcccttggccaatggagattatccaaaaaccatgagagcattagtc |
25168281 |
T |
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| Q |
219 |
agaacaaggttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatatgat |
278 |
Q |
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| T |
25168280 |
agaacaaggttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatttgat |
25168221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 25252786 - 25253045
Alignment:
| Q |
19 |
ataaaggctgctgaacgagctacagactttatgtttggatggtaagttcattaaaaagataaagcttatataattataccatccaaattaacacaattaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25252786 |
ataaaggctgctgaacgagctacagactttatgtttggatggtaagttcattacaaagataaaacttatataattataccatccaaattaacacaattaa |
25252885 |
T |
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| Q |
119 |
ggagatatatatgataacttattcgatttctttgtttaattataggtttatggatcccttggccaatggagattatcctaaaaccatgagagcattagtc |
218 |
Q |
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| T |
25252886 |
ggagatttatatgataacttattcaatttctttgtttaattataggtttatggatcccttggccaatggagattatcctaaaaccatgagagccttagtc |
25252985 |
T |
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| Q |
219 |
agaacaaggttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatatgat |
278 |
Q |
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| T |
25252986 |
agatcaaggttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatttgat |
25253045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 25180041 - 25179886
Alignment:
| Q |
123 |
atatatatgataacttattcgatttctttgtttaattataggtttatggatcccttggccaatggagattatcctaaaaccatgagagcattagtcagaa |
222 |
Q |
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|||||||||||||||||||| |||||| | | |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| || || ||| |
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| T |
25180041 |
atatatatgataacttattccatttctatatataattataggtttatggatcccttggtcaatggagattatccaaaaaccatgagagccttggttagat |
25179942 |
T |
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| Q |
223 |
caaggttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatatgat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
25179941 |
caaggttaccaaagtttacaaaagagcaatctaagcaagtcagtggttcatttgat |
25179886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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