View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_6 (Length: 648)
Name: NF1783_low_6
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 450 - 638
Target Start/End: Original strand, 25050206 - 25050393
Alignment:
| Q |
450 |
gtaatagacttgcacattgcatgcccaacttcaagaataaaattaaatgtttattgactttgaaatttggttttactcgattgagtttgacatatatgat |
549 |
Q |
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| T |
25050206 |
gtaatagacttgcacattgcatgcccaacttcaagaataaaattaaatgttaattgactttgaaatttggttttactcgattgagtttgacatatatgat |
25050305 |
T |
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| Q |
550 |
atatcccccaagctggttcagtcattttcacgagtagtccacatcgttgcaggaatgtaatgtaaagcatgcaattcaatattgatgat |
638 |
Q |
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| T |
25050306 |
atatcccccaaactggttcagtca-tttcacgagtagtccacatcgttgcaggaatgtaatgtaaagcatgcaattcaatattgatgat |
25050393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 171 - 393
Target Start/End: Original strand, 25049856 - 25050070
Alignment:
| Q |
171 |
ttttcgtgtcccatctttggtggactaaaccttcttgttttgttactgctctccttttgaactcatcttgattattctattgtgttttggaggttttatc |
270 |
Q |
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| T |
25049856 |
ttttcgtgtcccatctttggtggactaaaccttcttgt------actactc--cttttgaacccatcttgatagttctattgtgttttggaggttttatc |
25049947 |
T |
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| Q |
271 |
ctcttgtattatgaatatttgcaatttttctatttcagatacatcttatacttaaataacttgctaatatattttggcttctataaaaaatactttgaaa |
370 |
Q |
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| T |
25049948 |
cccttgtattatgaatatttgcaatatttctatttgagacacatcttgtacttaaatagcttgctaatatattttggcttctataaaaaaaactttgaaa |
25050047 |
T |
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| Q |
371 |
tgtgagagttaataaaggtattt |
393 |
Q |
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| T |
25050048 |
tgagataattaatagatgtattt |
25050070 |
T |
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