View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_62 (Length: 273)
Name: NF1783_low_62
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_62 |
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| [»] scaffold0209 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0209 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 9648 - 9903
Alignment:
| Q |
18 |
atagttacaaatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgaggg |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9648 |
atagttacaaatatagggctcgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgaggg |
9747 |
T |
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| Q |
118 |
aatagaaatttagctttgaaacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggttgt |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9748 |
aatagaaatttagctttgaaacatggtaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagtaagcatcggttgt |
9847 |
T |
|
| Q |
215 |
gaactttctgaaagcttatgccaacttgtttaagctttgttgcagtcctttgcttc |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9848 |
gaactttctgaaagcttatgccaacttgtttaagctttgttgcagtccttggcttc |
9903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 23102 - 23357
Alignment:
| Q |
18 |
atagttacaaatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgaggg |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23102 |
atagttacaaatatagggctcgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgaggg |
23201 |
T |
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| Q |
118 |
aatagaaatttagctttgaaacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggttgt |
214 |
Q |
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| T |
23202 |
aatagaaatttagctttgaaacatggtaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagtaagcatcggttgt |
23301 |
T |
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| Q |
215 |
gaactttctgaaagcttatgccaacttgtttaagctttgttgcagtcctttgcttc |
270 |
Q |
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| T |
23302 |
gaactttctgaaagcttatgccaacttgtttaagctttgttgcagtccttggcttc |
23357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 178536 - 178285
Alignment:
| Q |
25 |
caaatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaa |
124 |
Q |
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||||| || |||| ||| || |||||||||||||| |||| || ||||| |||||||||||||| ||||||||||| ||||| || || ||||| ||| |
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| T |
178536 |
caaatgtaaggctcgtcagggtagtgacattgctcgtaagcgattaggtttctaagaacacattcagttgtatggtctacttttaactgtgggaactgaa |
178437 |
T |
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| Q |
125 |
atttagct---------ttgaaacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggtt |
212 |
Q |
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| T |
178436 |
atctagctttaacacacttgcaacatggtaaacaacctaaacataaaaaccaactcaacaaagggtttttctcaaacttaatgtcaagtaaggatctgtt |
178337 |
T |
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| Q |
213 |
gtgaactttctgaaagcttatgccaacttgtttaagctttgttgcagtcctt |
264 |
Q |
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||||| |||| ||||||||| ||| ||| || | |||||||||| ||||| |
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| T |
178336 |
atgaaccttctcaaagcttataccagcttcattcaactttgttgcactcctt |
178285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 264
Target Start/End: Original strand, 115272 - 115505
Alignment:
| Q |
43 |
ggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttagctttgaa----- |
137 |
Q |
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||||||||||| ||||||||||| | | |||||| | |||||||||||| | ||| || ||||| || || |||||||||||| |||||||||| |
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| T |
115272 |
ggatagtgacactgctcaaaagcaactatgttcctcaaaacacattcggtcgcatgatctacttttaactgtgggaatagaaatctagctttgaagcact |
115371 |
T |
|
| Q |
138 |
----acatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaag---taatcggttgtgaactttctgaaagct |
230 |
Q |
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||| | ||||||||||||||||||||||||||| || || || ||||||| ||| || |||||||| | ||| ||| ||||| |||| |||||| |
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| T |
115372 |
tgcaacacggtaaacaacctaaacaaagaaaccaactcaacaaaggttttttctcaaactttatgtcaagcaatgatctgttatgaaccttctcaaagct |
115471 |
T |
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| Q |
231 |
tatgccaacttgtttaagctttgttgcagtcctt |
264 |
Q |
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||| ||| ||| || | |||||||||||||||| |
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| T |
115472 |
tataccagcttcattcaactttgttgcagtcctt |
115505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 607211 - 607094
Alignment:
| Q |
25 |
caaatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaa |
124 |
Q |
| |
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||||| ||||||||||||||||| ||||| ||||||||||| || || |||||||||| | ||| |||| |||| ||||| ||||| ||||| |||| |
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| T |
607211 |
caaatgtagggcttgtctggataatgacactgctcaaaagcaattagattcctaagaatgctttctgttgagtggtttacttttaattgtgggaacagaa |
607112 |
T |
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| Q |
125 |
atttagctttgaaacatg |
142 |
Q |
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|| |||||||||| |||| |
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| T |
607111 |
atctagctttgaagcatg |
607094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 106551 - 106618
Alignment:
| Q |
49 |
tgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagg |
116 |
Q |
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|||||||| || ||||| ||||||||||||||||||||||| ||||| |||| ||||| |||||||| |
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| T |
106551 |
tgacattgttccaaagcaatgaggttcctaagaacacattcagttgtttggtgtactttgaattgagg |
106618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 143299 - 143245
Alignment:
| Q |
40 |
tctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttg |
94 |
Q |
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|||| |||||||||||| ||||| || || |||||||||||||||||||| |||| |
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| T |
143299 |
tctgaatagtgacattgttcaaatgcgattaggttcctaagaacacattctgttg |
143245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 298674 - 298613
Alignment:
| Q |
49 |
tgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaa |
110 |
Q |
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|||||||| ||||| || ||||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
298674 |
tgacattgttcaaacgcgatgaggttcctaagaacacattcagttgcttggtctactttcaa |
298613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 45958368 - 45958433
Alignment:
| Q |
45 |
atagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaa |
110 |
Q |
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|||||||||||| ||| | || |||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
45958368 |
atagtgacattgttcacacgcgatgaggttcctaagaacacattatgttgcttggtctactttcaa |
45958433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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