View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_63 (Length: 272)
Name: NF1783_low_63
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 49361200 - 49361447
Alignment:
| Q |
6 |
acatcatcattaataactttacaccatcaatcacacgacacacgttacatttccattttccttttctatgtaaactccaatctttattcattcattcata |
105 |
Q |
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| T |
49361200 |
acatcatcattaataactttacaccatcaatcacacgacacacgttacatttccattttccttttctatgtaaactccaatctttattcattcattcata |
49361299 |
T |
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| Q |
106 |
ttattctcttgctccccccttctctcacacgttcacgtgttttcctgccacagacaattcaaatacggaggaatagtgataataattaagacaaaccaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |
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| T |
49361300 |
ttattctcttgctccccccttctctcacacgttcacgtgttttcctgccacagacaattcaaatacggaggaatagtg---attattaagagaaaccaaa |
49361396 |
T |
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| Q |
206 |
atacaagagaaaaaattatggtctattcattgtcttcatttctgctctatg |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49361397 |
atacaagagaaaaaattatggtctattcattgtcttcatttctgctctatg |
49361447 |
T |
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