View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_66 (Length: 264)
Name: NF1783_low_66
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 41705385 - 41705132
Alignment:
| Q |
1 |
agcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagtgtgttagaggtaatagtagcatttg |
100 |
Q |
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| T |
41705385 |
agcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagtgtgttagaggtaatagtagcatttg |
41705286 |
T |
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| Q |
101 |
agatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaaca--gtatttgnnnnnnnngtgttggaactt |
198 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
41705285 |
agatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggtatttg-tttttttgtgttggaactt |
41705187 |
T |
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| Q |
199 |
gaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgat |
255 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705186 |
gaatac--agagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgat |
41705132 |
T |
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