View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_7 (Length: 639)
Name: NF1783_low_7
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 7 - 623
Target Start/End: Original strand, 47035651 - 47036267
Alignment:
| Q |
7 |
gacatcatcaatgttttcaaattcctttatttgagatgagttgacatactaccgagaaaaacacattatttcacccgaggagcatgaaggcgagtgaaac |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47035651 |
gacagcatcaatgttttcaaattcctttatttgagatgagttgacatactaccgagaaaaacacattatttcacccgaggagcatgaaggcgagtgaaac |
47035750 |
T |
|
| Q |
107 |
cttcaacacgaacctccttattcttccattgccacaaaaagtgacaagctatagtacattcaccagaccacaaaattcacatattaatctcattgcgttt |
206 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47035751 |
cttcaacacaaacctccttattcttccattgccacaaaaagtgacaagctatggtacattcaccagaccacaaaattcacatattaatctcattgcgttt |
47035850 |
T |
|
| Q |
207 |
gcttaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaatgcatctatatcgccctagctagcag |
306 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47035851 |
gctcaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaatgcatctatatcgccctagctagcag |
47035950 |
T |
|
| Q |
307 |
acactcgcggagaacatgtaaaattgattcaatttcattaccacaaaaattgcagcacgaatcacctaattgattacgcgactttttcaaatcaatgaac |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47035951 |
acactcgcggagaacatgtaaaattgattcaatttcattaccacaaaaattgcagcacgaatcacctaattgattacacgactttttcaaatcaatgaac |
47036050 |
T |
|
| Q |
407 |
agtcttccatgacaaactagccaaataaagtatctaacacgctctggagcatgaattctccaaacattggaccaaaagctattagcctccatgttattaa |
506 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47036051 |
agtcttccatgacaaactagccaaataaagcatctaacacgctctggagcatgaattctccaaacattggaccaaaagctattagcctccatgttattaa |
47036150 |
T |
|
| Q |
507 |
acctgcaaagggacttgtaacttgtaagtggtagcgacaatatcccagggtaacacacaaatcagctcttaaattgatatcagattgcactaggctcctt |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47036151 |
acctgcaaagggacttgtaacttgtaagtggtagcgacaatatcccagggtaacacacaaatcagctcctaaattgatatcagattgcactaggctcctt |
47036250 |
T |
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| Q |
607 |
atgtcaaggactatatc |
623 |
Q |
| |
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||||||||||||||||| |
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| T |
47036251 |
atgtcaaggactatatc |
47036267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 88 - 291
Target Start/End: Complemental strand, 36571801 - 36571596
Alignment:
| Q |
88 |
gcatgaaggcgagtgaaaccttcaacacgaacctccttattcttccattgccacaaaaagtgacaagctatagtacattcaccagaccac---aaaattc |
184 |
Q |
| |
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|||||| | |||||||||||||||||| |||||| ||||||||| ||||| ||| ||||||||| ||||| ||| ||||||||||| | |||| |
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| T |
36571801 |
gcatgaggacgagtgaaaccttcaacatgaaccttcttattctttcattgttgcaatgagtgacaagttatagcccatacaccagaccacacaataattt |
36571702 |
T |
|
| Q |
185 |
acatattaatctcattgcgtttgcttaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaatgca |
284 |
Q |
| |
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|||| ||| |||||| |||| | ||| |||||| ||||||||||||||||||| || ||||||||||| ||||| ||||| ||| |||||| || |
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| T |
36571701 |
tcatactaacctcattcattttgttcaaatttaactcgaaccaatccttaaaatcac-ttctaaagaaagctttgcgatccttccatggaaccaaataca |
36571603 |
T |
|
| Q |
285 |
tctatat |
291 |
Q |
| |
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|| |||| |
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|
| T |
36571602 |
tccatat |
36571596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 231 - 353
Target Start/End: Original strand, 44495523 - 44495644
Alignment:
| Q |
231 |
cttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaatgcatctatatcgccctagctagcagacactcgcggagaacatgtaaaat |
330 |
Q |
| |
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||||||||||| ||||||||||| |||||||||| || | | | ||| |||||| |||||| ||||| |||| |||||||| ||||| |||||||||| |
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| T |
44495523 |
cttaaaatcac-tttcaaagaaaacttcacgatcctttcctgaaaccagatgcattcatatcgtcctagttagcggacactcgtggagagcatgtaaaat |
44495621 |
T |
|
| Q |
331 |
tgattcaatttcattaccacaaa |
353 |
Q |
| |
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||||| |||||| |||||||||| |
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|
| T |
44495622 |
tgattaaatttcgttaccacaaa |
44495644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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