View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_70 (Length: 256)

Name: NF1783_low_70
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_70
NF1783_low_70
[»] chr1 (8 HSPs)
chr1 (20-244)||(44022153-44022377)
chr1 (20-207)||(42132002-42132189)
chr1 (68-178)||(32924064-32924174)
chr1 (30-221)||(30939555-30939746)
chr1 (61-165)||(43896445-43896548)
chr1 (76-167)||(12751082-12751173)
chr1 (98-134)||(27394626-27394662)
chr1 (112-148)||(35537510-35537546)
[»] chr7 (9 HSPs)
chr7 (27-213)||(26754850-26755036)
chr7 (27-216)||(13596890-13597079)
chr7 (20-213)||(22911138-22911331)
chr7 (28-220)||(23040008-23040201)
chr7 (35-221)||(15026339-15026521)
chr7 (30-215)||(48859417-48859602)
chr7 (20-165)||(23586159-23586304)
chr7 (61-161)||(26036820-26036920)
chr7 (103-150)||(28544168-28544215)
[»] chr6 (4 HSPs)
chr6 (27-213)||(5827545-5827731)
chr6 (20-211)||(15610074-15610265)
chr6 (55-221)||(3627334-3627500)
chr6 (103-151)||(35220250-35220298)
[»] chr4 (5 HSPs)
chr4 (19-221)||(48026050-48026252)
chr4 (22-213)||(39774825-39775018)
chr4 (78-171)||(18570333-18570425)
chr4 (49-171)||(32663636-32663758)
chr4 (67-147)||(15020664-15020744)
[»] chr3 (9 HSPs)
chr3 (20-221)||(53581251-53581452)
chr3 (20-213)||(52585586-52585779)
chr3 (20-221)||(20685370-20685577)
chr3 (20-166)||(39453066-39453212)
chr3 (20-128)||(8726847-8726955)
chr3 (20-128)||(9078734-9078842)
chr3 (20-131)||(4136356-4136467)
chr3 (99-160)||(25537476-25537537)
chr3 (103-150)||(44328385-44328432)
[»] chr2 (9 HSPs)
chr2 (20-221)||(15745506-15745710)
chr2 (20-212)||(5849098-5849290)
chr2 (20-218)||(18579473-18579671)
chr2 (27-160)||(33170911-33171043)
chr2 (27-214)||(36098772-36098959)
chr2 (31-166)||(19051551-19051686)
chr2 (20-149)||(30355318-30355453)
chr2 (49-172)||(26370404-26370527)
chr2 (49-147)||(27635086-27635184)
[»] chr8 (7 HSPs)
chr8 (20-221)||(10260394-10260595)
chr8 (20-213)||(17834338-17834531)
chr8 (21-214)||(8783526-8783719)
chr8 (20-141)||(9604983-9605104)
chr8 (61-214)||(8871815-8871968)
chr8 (49-149)||(96070-96170)
chr8 (112-150)||(4424683-4424721)
[»] chr5 (4 HSPs)
chr5 (19-213)||(32295819-32296012)
chr5 (20-216)||(17237395-17237591)
chr5 (30-213)||(20174536-20174719)
chr5 (119-151)||(41375445-41375477)
[»] scaffold0913 (1 HSPs)
scaffold0913 (20-220)||(3508-3708)
[»] scaffold0898 (1 HSPs)
scaffold0898 (20-220)||(1893-2093)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 44022153 - 44022377
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44022153 tggtggatggtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatactatgtcaactctag 44022252  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccatat 219  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  44022253 tgttgagtttgtgagaagacaaacaaatgagacagctcatagattagttaaggtggtcacatcctcagctagtttctagattttggtagaaataccatat 44022352  T
Q  220 tgcattaaaaaggtgaaataagtga 244  Q
    |||||||||||||||||||||||||    
T  44022353 tgcattaaaaaggtgaaataagtga 44022377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 42132002 - 42132189
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  42132002 tggtggatagtttttcatctgcacatcaggatgttacataatttgggatgattatccataatcgtaaaactatctttgaacaatattatatcaactctag 42132101  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggta 207  Q
    |||||||||||| || |||||| |||||||| || | |||||||||| |||||||  ||  || ||| |||||||| | |||||||||    
T  42132102 tgttgagtttgtgaggagacaaacaaatgaggcaacccatagattagctaaggtgaccacatcttcatctagtttccaaattttggta 42132189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 32924064 - 32924174
Alignment:
Q  68 tgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgagacagctcatagattagt 167  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||      
T  32924064 tgattatccttaattgtaaaactatctttgaacaatatcatgtcaactctagtgttgagtttgtaaaaagacaagtaaatgagacaactcatagattaac 32924163  T
Q  168 taaggtggtca 178  Q
    ||||| |||||    
T  32924164 taagggggtca 32924174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 30939746 - 30939555
Alignment:
Q  30 tttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagttt 129  Q
    |||||||||||||||| | ||||||||| |||||||||||||||| |||||||  |||||||||||||| |||||||||  |||||||| |  |||||||    
T  30939746 tttttcatctgcacatcaagatgttacaaaatttgggatgattattcataattttaaaactatctttgatcaatattataccaactctaataatgagttt 30939647  T
Q  130 gtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccatattg 221  Q
    || |  ||| ||| |||||||  | |  ||||||||  |||||  | || || ||||||||||||| | | ||||||| |||||||| ||||    
T  30939646 gtgatgagataagaaaatgaggtaacctatagattaactaaggcagccaggttctcaactagtttccaaaatttggtataaataccagattg 30939555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 43896445 - 43896548
Alignment:
Q  61 tttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgagacagctcata 160  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||   || |||||||||| || ||||||  |||||||||| ||||||    
T  43896445 tttggaatgattattcataattgtaaaactatctttgaacaatattatatcaacttccgtattgagtttgtgaggagacaa-aaaatgagacatctcata 43896543  T
Q  161 gatta 165  Q
     ||||    
T  43896544 aatta 43896548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 12751173 - 12751082
Alignment:
Q  76 cataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgagacagctcatagattagt 167  Q
    |||||||  |||||||||||  |  |||||||||| ||||||||| |||||||| | |||||||| ||||||||  || |||||||||||||    
T  12751173 cataattataaaactatcttcaactaatattatgtaaactctagtattgagtttatgagaagacacgcaaatgacgcaactcatagattagt 12751082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 27394626 - 27394662
Alignment:
Q  98 aacaatattatgtcaactctagtgttgagtttgtaag 134  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  27394626 aacaatattatgttaactccagtgttgagtttgtaag 27394662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 35537510 - 35537546
Alignment:
Q  112 aactctagtgttgagtttgtaagaagacaagcaaatg 148  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  35537510 aactcaagtgttgagtttgtacgaagacaagcaaatg 35537546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 26754850 - 26755036
Alignment:
Q  27 tagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgag 126  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  26754850 tagtttttcatcggcacatcaggatgttacataatttgggatgattatccataattgtaaaactatctttgaacaatattatgtcaactatagtgttgag 26754949  T
Q  127 tttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaata 213  Q
    ||||| || ||||||||||||||| |||| |||||||||  ||||| || ||  |||||||||||||| ||||||||| ||||||||    
T  26754950 tttgtgaggagacaagcaaatgaggcagcccatagattatctaaggcggccacatcctcaactagtttttagattttgatagaaata 26755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 13596890 - 13597079
Alignment:
Q  27 tagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgag 126  Q
    ||||||||| ||||||||| ||||| ||||| ||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  13596890 tagtttttcctctgcacatcaggattttacagaatttgggatgataattcataattgtaaaactatctttgaacaatactatgtcaactctagtgttgag 13596989  T
Q  127 tttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaatacca 216  Q
    ||||| || ||||||||||||||| |||| | |||||||| ||||| || ||| |||||||||||||||||||||||| |||||||||||    
T  13596990 tttgtgaggagacaagcaaatgaggcagcccctagattagctaaggcggccatatcctcaactagtttctagattttgttagaaatacca 13597079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 22911138 - 22911331
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| |||||||||||||| || | ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22911138 tggtggatagtttttcatctgtacgtcaggatgttacagaatttgggatgattatccataattgtaaaactatctttgaacaatattatgtcaactctag 22911237  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaata 213  Q
    | ||||||||||||| |||||||||||||||  ||  |||||||||| ||||| || ||  || ||| |||||||| ||||||||| |||||||    
T  22911238 ttttgagtttgtaaggagacaagcaaatgagggaggccatagattagctaaggaggccacatcttcatctagtttccagattttggcagaaata 22911331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 23040201 - 23040008
Alignment:
Q  28 agtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagt 127  Q
    |||||||||||| ||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23040201 agtttttcatctacacatcaggatgttacagaatttgcgatgattatccataattgtaaaactatctttgaacaatattatgtcaactctagtgttgagt 23040102  T
Q  128 ttgtaagaaga-caagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccatatt 220  Q
    ||||||| ||| |||||||||||| |||| |||||||||  ||||| || ||  || | | | |||||  ||||||||||||||||||||||||    
T  23040101 ttgtaaggagaccaagcaaatgaggcagcccatagattaactaaggaggccacatctttagcaagttttcagattttggtagaaataccatatt 23040008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 15026339 - 15026521
Alignment:
Q  35 catctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaag 134  Q
    ||||||||| | ||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  15026339 catctgcacgtcaggatgttacataatttgggatgattatccatatttgttaaactatctttgaacaatattatgtcaactctagtgctgactttgtaag 15026438  T
Q  135 aagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccatattg 221  Q
     |||||||||    || |||| |||||||||| |||||  | ||  || ||| |||||||| |||||||||||||||||||| ||||    
T  15026439 gagacaagca----aggcagcccatagattagctaaggaagccacatcttcagctagtttccagattttggtagaaataccagattg 15026521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 48859417 - 48859602
Alignment:
Q  30 tttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagttt 129  Q
    |||||||||||||||| |||||||| || |||||||||||||||| |||||||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  48859417 tttttcatctgcacatcaggatgttgcagaatttgggatgattattcataattgtaaaactatctatgaacaatattatatcaactctagtgttgagttt 48859516  T
Q  130 gtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaatacc 215  Q
    || |  |||||||||||| || |||   ||||| ||| |||||||| |   ||||||| ||||||  |||||||||||||||||||    
T  48859517 gtgaagagacaagcaaataaggcagtctatagactagctaaggtggccgcatcctcaattagttttcagattttggtagaaatacc 48859602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 23586159 - 23586304
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| || |||||||||||||||| | ||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||  ||     
T  23586159 tggtggataatttttcatctgcacatcaagatgttacaaagtttgggatgattattcataattgtaaaactatctttgaacaatattatgtcaaccttaa 23586258  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagatta 165  Q
    |||| ||||||| || |||||| ||||||||||| | |||||||||    
T  23586259 tgttcagtttgtgaggagacaaacaaatgagacaacccatagatta 23586304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 161
Target Start/End: Complemental strand, 26036920 - 26036820
Alignment:
Q  61 tttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgagacagctcata 160  Q
    |||||||||||||||||||| || | |||||| ||  ||||||||||||| ||||  |||||||||||| ||||||| ||| ||||||||||||||||||    
T  26036920 tttgggatgattatccataagtgtagaactattttcaaacaatattatgttaacttcagtgttgagtttataagaaggcaaacaaatgagacagctcata 26036821  T
Q  161 g 161  Q
    |    
T  26036820 g 26036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 28544168 - 28544215
Alignment:
Q  103 tattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgag 150  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||    
T  28544168 tattatgtaaactctagtgttgagtttgtacgaagacaagcaaatgag 28544215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 5827545 - 5827731
Alignment:
Q  27 tagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgag 126  Q
    ||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  5827545 tagtttttcatttgcacgtcaggatgttacaaaatttgggatgattatccataattgtaaaactatctttgaacaatattatatcaactctagtgttgag 5827644  T
Q  127 tttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaata 213  Q
    |||||||| ||||||||||||||| ||||||||| ||||| ||||| || || ||| ||| |||||||| |||||||||||||||||    
T  5827645 tttgtaaggagacaagcaaatgaggcagctcatacattagctaaggaggccacgtcttcagctagtttccagattttggtagaaata 5827731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 15610074 - 15610265
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  15610074 tggtggatagtttttcatctgcacatcaggatgttacagaatttgggatgattatccataattgtaaaactatctttgaacaatactatgtcaactctag 15610173  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaa 211  Q
    |||||||||||| || |||||| ||||||||  ||| |||||||||| ||||  |  ||  |||||||||||| || |||||||| ||||||    
T  15610174 tgttgagtttgtgaggagacaaacaaatgaggtagcccatagattagctaagacgaccacatcctcaactagtatccagattttgatagaaa 15610265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 3627334 - 3627500
Alignment:
Q  55 acataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgagacag 154  Q
    ||||| |||||||||||||||||||| || | | |||| ||  ||||||||| ||| ||||| | ||||||||||||||| |  |||| |||||||  ||    
T  3627334 acatagtttgggatgattatccataactgtatagctattttcaaacaatattttgttaactccaatgttgagtttgtaaggaagcaagaaaatgaggtag 3627433  T
Q  155 ctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccatattg 221  Q
      ||||| |||| |||||||| ||  || ||| ||||||| || || ||||| ||||||||| ||||    
T  3627434 accatagtttagctaaggtggccacatcttcagctagtttttaaatattggttgaaataccaaattg 3627500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 35220298 - 35220250
Alignment:
Q  103 tattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgaga 151  Q
    |||||||  ||||||||||||||||||||| | ||||||||||| ||||    
T  35220298 tattatgaaaactctagtgttgagtttgtacggagacaagcaaacgaga 35220250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 48026252 - 48026050
Alignment:
Q  19 atggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactcta 118  Q
    ||||||||||||||||||||| ||||| ||||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  48026252 atggtgggtagtttttcatctacacatcaggatgttacaaattttgggatgattattcataattgtaaaactatctttgaacaatattatgtcaactcta 48026153  T
Q  119 gtgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccata 218  Q
    |||||||||||   || ||||||||||||||  |||| |||||||||| ||||| |  || ||| ||||||||||| ||||||||||||||||||||| |    
T  48026152 gtgttgagtttacgaggagacaagcaaatgaagcagcccatagattagctaaggcgaccacgtcttcaactagtttttagattttggtagaaataccaga 48026053  T
Q  219 ttg 221  Q
    |||    
T  48026052 ttg 48026050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 39774825 - 39775018
Alignment:
Q  22 gtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattg-caaaactatctttgaacaat-attatgtcaactctag 119  Q
    |||| |||||||| |||||  ||||||||||||||| |||||||||||||||| |||||| |  |||||||| |||||| | | |||||||||||| |||    
T  39774825 gtggatagtttttgatctgtgcattaggatgttacaaaatttgggatgattattcataatcgtaaaaactatttttgaatattaattatgtcaactttag 39774924  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaata 213  Q
    |||||||||||| || |||||| ||||| || ||   |||||||||  ||||| || ||  |||||||||| ||| ||||||||| | ||||||    
T  39774925 tgttgagtttgtgaggagacaaacaaataaggcaatccatagattaactaaggcggccacatcctcaactaatttttagattttgattgaaata 39775018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 18570425 - 18570333
Alignment:
Q  78 taattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaag 171  Q
    |||||| |||| ||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||| |||||| || || |||||| ||||    
T  18570425 taattgtaaaaatatctttgaacaatattatatcaactctagtgttgagtttgtgaggagacaag-aaacgagacaacttatggattagctaag 18570333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 171
Target Start/End: Original strand, 32663636 - 32663758
Alignment:
Q  49 gatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatg 148  Q
    ||||||||  ||||||| || |||||||| ||||| |||||| |||||  ||| |||||||  ||||| | ||||||||||||| | |||||||||||||    
T  32663636 gatgttaccgaatttggtatcattatccaaaattgtaaaactctctttagacattattatgaaaactcgactgttgagtttgtacggagacaagcaaatg 32663735  T
Q  149 agacagctcatagattagttaag 171  Q
    |||  ||||||| ||||| ||||    
T  32663736 agattgctcataaattagctaag 32663758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 15020664 - 15020744
Alignment:
Q  67 atgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaat 147  Q
    ||||| ||| ||||||| | ||||||||| |   |||||||||| ||||||| |||||||||||| | ||||||| |||||    
T  15020664 atgataatctataattgtagaactatcttcggctaatattatgtaaactctaatgttgagtttgtgaaaagacaaacaaat 15020744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 53581251 - 53581452
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| ||||||||||| ||||| | ||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53581251 tggtggatagtttttcatttgcacgtcaggatgttacaaaagttgggatgattatccataattgtaaaactatctttgaacaatattatgtcaactctag 53581350  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccatat 219  Q
    | ||||||||||||| ||||||||||||||| |||| |||||||||| ||||| || ||  |  || ||||||||||||||||||||| || || |||||    
T  53581351 ttttgagtttgtaaggagacaagcaaatgaggcagcccatagattagataaggaggccacattttctactagtttctagattttggtaaaattatcatat 53581450  T
Q  220 tg 221  Q
    ||    
T  53581451 tg 53581452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 52585779 - 52585586
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  52585779 tggtggatagtttttcatctgcacatcaggatgttacagaatttgagatgattatttataattgtaaaactatctttgaacaatattatgtcaactctag 52585680  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaata 213  Q
    ||||||||| || |  ||||||||||||||| |||| |||||||||  ||||| || ||  |||||| |||||||| |||||||||||||||||    
T  52585679 tgttgagttcgtgatgagacaagcaaatgaggcagcccatagattaactaaggcggccacatcctcagctagtttccagattttggtagaaata 52585586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 20685370 - 20685577
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaa------tattatgtcaa 113  Q
    |||||| ||||||||||| ||| | | |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||      |||||||||||    
T  20685370 tggtggatagtttttcatttgcgcgtcaggaagttacaaaatttgggatgattatccataattgcaaaactatctttgaacaatattattattatgtcaa 20685469  T
Q  114 ctctagtgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaata 213  Q
    |||||||||||||||||| || |||||||||||||||||||| |||||||||| ||||| |  ||  || ||| |||||||| | |||||| ||||||||    
T  20685470 ctctagtgttgagtttgtgaggagacaagcaaatgagacagcccatagattagctaaggagaccacatcttcagctagtttccaaattttgatagaaata 20685569  T
Q  214 ccatattg 221  Q
    ||| ||||    
T  20685570 ccagattg 20685577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 39453212 - 39453066
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| |||||||||||| |||||| | ||| ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||     
T  39453212 tggtggatagtttttcatcagcacatcaagatattacaaaatttgggatgatgatccataattgtaaaactatctttgaacaatattatgtcaactctaa 39453113  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattag 166  Q
    ||| || ||||| || |||||| |||||||| |||  ||||||||||    
T  39453112 tgtggactttgtgaggagacaaacaaatgagtcagtccatagattag 39453066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 8726847 - 8726955
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| || ||||| ||| |||||||||||||||||| | |||| ||||||||| ||||| || |||| |||||||||||| ||| ||||||||||| |    
T  8726847 tggtggatactttttaatcagcacattaggatgttacagagtttgtgatgattattcataagtgtaaaattatctttgaacagtatcatgtcaactcttg 8726946  T
Q  120 tgttgagtt 128  Q
     ||||||||    
T  8726947 agttgagtt 8726955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 9078734 - 9078842
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| || ||||| ||| |||||||||||||||||| | |||| ||||||||| ||||| || |||| |||||||||||| ||| ||||||||||| |    
T  9078734 tggtggatactttttaatcagcacattaggatgttacagagtttgtgatgattattcataagtgtaaaattatctttgaacagtatcatgtcaactcttg 9078833  T
Q  120 tgttgagtt 128  Q
     ||||||||    
T  9078834 agttgagtt 9078842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 4136356 - 4136467
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaa--ctct 117  Q
    |||||| ||||||||||||| || || || |||||| |   ||| |||||||||| |||| ||| ||||||| | |||||||||||||||||||  ||||    
T  4136356 tggtggatagtttttcatctccagatcagaatgttagag--tttaggatgattattcatatttgtaaaactaccattgaacaatattatgtcaactctct 4136453  T
Q  118 agtgttgagtttgt 131  Q
    ||||||||||||||    
T  4136454 agtgttgagtttgt 4136467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 25537537 - 25537476
Alignment:
Q  99 acaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgagacagctcata 160  Q
    ||||| |||| | ||||||||||||||||||||  | ||||||||||||||| |||||||||    
T  25537537 acaattttatttaaactctagtgttgagtttgtgcggagacaagcaaatgaggcagctcata 25537476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 44328385 - 44328432
Alignment:
Q  103 tattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgag 150  Q
    |||||||  |||||||||||||||||| || |||||||||||||||||    
T  44328385 tattatgaaaactctagtgttgagtttttacgaagacaagcaaatgag 44328432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 15745710 - 15745506
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||      
T  15745710 tggtggatagtttttcatctgcacgttaggatgttacagaatttgggatgattatccataattgtaaaactatatttgaacaatattatgtcaactctta 15745611  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagt---taaggtggtcatgtcctcaactagtttctagattttggtagaaatacca 216  Q
    |||||| |||||||| |||||||||||||||||||| ||||||||| |   ||||| || ||  || ||| |||||||| ||||||| ||||||||||||    
T  15745610 tgttgaatttgtaaggagacaagcaaatgagacagcccatagattattagctaaggaggccacatcttcagctagtttccagattttagtagaaatacca 15745511  T
Q  217 tattg 221  Q
     ||||    
T  15745510 gattg 15745506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 5849098 - 5849290
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| || |||||||||| ||||| ||||||||||||||| ||||||||||||  ||||||  ||||||||||||||||||| |||||||||||||||    
T  5849098 tggtggataatttttcatctacacatcaggatgttacataatgtgggatgattatttataattataaaactatctttgaacaatgttatgtcaactctag 5849197  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaat 212  Q
    |||||||||||| || |||||| |||||||| ||||||||||||||| | |||  | ||  ||||||||||||||  ||||||||||||||||    
T  5849198 tgttgagtttgtgaggagacaaacaaatgaggcagctcatagattagctgaggcagccacatcctcaactagttttcagattttggtagaaat 5849290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 18579671 - 18579473
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| ||||||||||||||||| | ||| ||||||| ||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||| |||    
T  18579671 tggtggatagtttttcatctgcacgtcaggttgttacagaatttgggatgataatctataattgtaaaactatcttagaacaatattatgtcaactttag 18579572  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccata 218  Q
    |||||||||||| || |||||| |||||||| |||| |||||||||| ||||  || ||  || ||| |||||||| |||||||| |||||||||||||    
T  18579571 tgttgagtttgtgaggagacaaacaaatgaggcagcccatagattagctaagtaggccacatcttcagctagtttccagattttgatagaaataccata 18579473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 33171043 - 33170911
Alignment:
Q  27 tagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgag 126  Q
    ||||||||||||||||||| ||||||||||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  33171043 tagtttttcatctgcacatcaggatgttacagagtttgg-atgattattcataattgtaaaactatctttgaacaatattatgtcaactctagttttgag 33170945  T
Q  127 tttgtaagaagacaagcaaatgagacagctcata 160  Q
    ||  | || ||||||||||||||||| |||||||    
T  33170944 ttcttgaggagacaagcaaatgagacggctcata 33170911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 36098772 - 36098959
Alignment:
Q  27 tagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgag 126  Q
    ||||||||||| ||||||| ||||||||| | | | | | || ||||| ||| |||| |||||||| ||||||||||||||||| ||||  |||||||||    
T  36098772 tagtttttcatatgcacatcaggatgttatagagtattgcattattattcatgattggaaaactatttttgaacaatattatgttaactaaagtgttgag 36098871  T
Q  127 tttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaatac 214  Q
    ||| | |||||||||||||||||  || |||||||||||||||||  |||||   ||||| ||| ||||| |||||| ||| ||||||    
T  36098872 tttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcagctaatttctcgatttttgtataaatac 36098959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 19051551 - 19051686
Alignment:
Q  31 ttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttg 130  Q
    ||||||||||||||| || |||||||||| || ||||||||||| ||||| || |||||||| |||||||||||||| | ||||| || |||||||||||    
T  19051551 ttttcatctgcacatcagaatgttacatagttcgggatgattattcataagtgtaaaactatatttgaacaatattacgacaactataatgttgagtttg 19051650  T
Q  131 taagaagacaagcaaatgagacagctcatagattag 166  Q
    | |  ||||||| ||||||  ||||  |||||||||    
T  19051651 tgaagagacaagaaaatgaagcagccaatagattag 19051686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 30355453 - 30355318
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatga-ttatccataattgcaaaactatcttt------gaacaatattatgtca 112  Q
    |||||| ||||||||||| ||||||| | ||||||| ||| |||||||||| |||| || ||||| ||||||||||||       || ||||||||||||    
T  30355453 tggtggatagtttttcatttgcacatcatgatgttatatagtttgggatgatttattcaaaattgtaaaactatctttaaataataataatattatgtca 30355354  T
Q  113 actctagtgttgagtttgtaagaagacaagcaaatga 149  Q
    | ||||||||||||||||| |  ||||||||||||||    
T  30355353 a-tctagtgttgagtttgtgaagagacaagcaaatga 30355318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 26370404 - 26370527
Alignment:
Q  49 gatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatg 148  Q
    ||||||||  ||||||| || |||||||| ||||| |||||| |||||   ||||||||||  ||||| | ||||||||||||  | || ||||||||||    
T  26370404 gatgttaccgaatttggtatcattatccaaaattgtaaaactctctttaggcaatattatgaaaactcgactgttgagtttgtgcggaggcaagcaaatg 26370503  T
Q  149 agacagctcatagattagttaagg 172  Q
    ||   ||||||| ||||| |||||    
T  26370504 aggttgctcataaattagctaagg 26370527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 27635086 - 27635184
Alignment:
Q  49 gatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaat 147  Q
    ||||||||  ||||||| || |||||||| ||||| |||||| |||||   || |||||||  ||||| | ||||||||||||| | ||||||||||||    
T  27635086 gatgttaccgaatttggtatcattatccaaaattgtaaaactctctttaggcattattatgaaaactcgactgttgagtttgtacggagacaagcaaat 27635184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 10260394 - 10260595
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||    
T  10260394 tggtggatagtttttcatctgcacatcatgatgttacataatttgggatgattattcataattgtaaaactatctttgaacaatactatgtcaactctag 10260493  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccatat 219  Q
    |||||||||| | |  |||||||||||||||  ||| |||||||| | ||||| || ||  ||||  ||||||||||||||||||||| |||||||| ||    
T  10260494 tgttgagtttctgaagagacaagcaaatgaggtagcccatagatttgctaaggcggccacatccttgactagtttctagattttggtaaaaataccagat 10260593  T
Q  220 tg 221  Q
    ||    
T  10260594 tg 10260595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 17834531 - 17834338
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| | | ||||||||||| |||| ||||||||||||||    
T  17834531 tggtggatagtttttcatctgcacatcaggatgttacagaatttgggatgattattcataattgtatagctatctttgaataatactatgtcaactctag 17834432  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaata 213  Q
    |||||||||||| || |||||| ||||||||||| | |||||||||| ||||| || ||  |||||| |||||||| |||||||| ||||||||    
T  17834431 tgttgagtttgtgaggagacaaacaaatgagacaacccatagattagctaaggcggccacatcctcagctagtttccagattttgatagaaata 17834338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 8783526 - 8783719
Alignment:
Q  21 ggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagt 120  Q
    ||||| ||||||||||||| || || ||||||||||| |||||||| ||||||| |||||||| |||||||| |||||| || |||||||  ||||||||    
T  8783526 ggtggatagtttttcatcttcatatcaggatgttacaaaatttggggtgattatacataattgtaaaactatatttgaaaaacattatgttgactctagt 8783625  T
Q  121 gttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaatac 214  Q
    ||||||||||| |  ||||||| ||| ||| |||| |||||||||| ||||| |  ||  ||  ||||| ||||||||||||||||||||||||    
T  8783626 gttgagtttgtgacgagacaaggaaacgaggcagcccatagattagctaaggcgaccacatctccaacttgtttctagattttggtagaaatac 8783719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 9605104 - 9604983
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| ||||||||||| ||||||| | ||||||| | | |||| ||||||||| |||||||| |||| ||||||| ||||||||||| ||||||||||    
T  9605104 tggtggatagtttttcatttgcacatcaagatgttatagagtttgtgatgattattcataattgtaaaattatctttaaacaatattatatcaactctag 9605005  T
Q  120 tgttgagtttgtaagaagacaa 141  Q
    |||||||||||| || ||||||    
T  9605004 tgttgagtttgtgaggagacaa 9604983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 8871968 - 8871815
Alignment:
Q  61 tttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatgagacagctcata 160  Q
    |||||||||||||| |||||||  |||| ||| ||||||||||||||||| |||| ||||||||||||||| || | |||||||||||||  ||| ||||    
T  8871968 tttgggatgattattcataattataaaattatttttgaacaatattatgttaactttagtgttgagtttgtgaggatacaagcaaatgaggtagcccata 8871869  T
Q  161 gattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaatac 214  Q
     ||||| ||||| |  ||  || ||| || ||||| ||||||||||||||||||    
T  8871868 aattagctaaggcgaccacatcatcagcttgtttcaagattttggtagaaatac 8871815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 96070 - 96170
Alignment:
Q  49 gatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagtttgtaagaagacaagcaaatg 148  Q
    ||||||||  ||||||| || |||||||| ||||| |||||| ||||| | || |||||||  ||||| | ||||||||||||| | |||||| ||||||    
T  96070 gatgttactgaatttggtatcattatccaaaattgtaaaactctctttaagcagtattatgaaaactcaattgttgagtttgtatgtagacaaacaaatg 96169  T
Q  149 a 149  Q
    |    
T  96170 a 96170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 4424721 - 4424683
Alignment:
Q  112 aactctagtgttgagtttgtaagaagacaagcaaatgag 150  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  4424721 aactctagtgttgagtttgtacggagacaagcaaatgag 4424683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 32296012 - 32295819
Alignment:
Q  19 atggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactcta 118  Q
    ||||||| ||||||||||||||||| | | |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  32296012 atggtggatagtttttcatctgcacgtcaagatgttgcagaatttgggatgattatccataattgtaaaactatctttgaacaatatcatgtcaactcta 32295913  T
Q  119 gtgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaata 213  Q
    ||||||||||||| ||||||||| |||||||| |||| |||||||||| |||||    ||  || ||| |||||||| |||||||| ||||||||    
T  32295912 gtgttgagtttgtgagaagacaaacaaatgaggcagc-catagattagctaaggataccacatcttcagctagtttccagattttgatagaaata 32295819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 17237591 - 17237395
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| ||||||||||||| ||||| | ||||||||| || ||||||||||||| ||||| || |||||||||||| ||||||| ||||||||||||||    
T  17237591 tggtggatagtttttcatctccacatcatgatgttacagaaattgggatgattattcataactgtaaaactatctttaaacaatactatgtcaactctag 17237492  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaatacca 216  Q
    |||||||||||| || || ||| |||||||| |||| ||||||| |||||||| || ||  |||||| |||||||| ||||||||||| ||||||||    
T  17237491 tgttgagtttgtgaggaggcaaacaaatgaggcagcacatagataagttaaggaggccacatcctcagctagtttccagattttggtataaatacca 17237395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 20174536 - 20174719
Alignment:
Q  30 tttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctagtgttgagttt 129  Q
    ||||| |||| ||||| | ||||||| | | |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  20174536 ttttttatctacacatcaagatgttatagagtttgagatgattattcataattgtaaaactatctttgaacaatattatgtcaattctagtgttgagttt 20174635  T
Q  130 gtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaata 213  Q
    || || |||||||||||||| |||||    | ||||||||||| || |   |  ||| ||||||||||||||||| ||||||||    
T  20174636 gtgaggagacaagcaaatgaaacagcctgcatattagttaaggcggccgcattttcagctagtttctagattttgatagaaata 20174719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 41375445 - 41375477
Alignment:
Q  119 gtgttgagtttgtaagaagacaagcaaatgaga 151  Q
    ||||||||||||||| |||||||||||||||||    
T  41375445 gtgttgagtttgtaaaaagacaagcaaatgaga 41375477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 3508 - 3708
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| || |||||||||||||||| ||||||||||| | |||||||| ||||| |||||||| |||| ||||||||||| ||||||||| ||||||||    
T  3508 tggtggataatttttcatctgcacatcaggatgttacagagtttgggataattattcataattgtaaaattatctttgaacgatattatgtgaactctag 3607  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccatat 219  Q
    |||||| ||||| || ||||||||||||||| || ||| |||||||| ||||  || ||  |||||| |||||||| | |||||||| ||||| ||||||    
T  3608 tgttgaatttgtgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagtttccaaattttggtcgaaatcccatat 3707  T
Q  220 t 220  Q
    |    
T  3708 t 3708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 2093 - 1893
Alignment:
Q  20 tggtgggtagtttttcatctgcacattaggatgttacataatttgggatgattatccataattgcaaaactatctttgaacaatattatgtcaactctag 119  Q
    |||||| || |||||||||||||||| ||||||||||| | |||||||| ||||| |||||||| |||| ||||||||||| ||||||||| ||||||||    
T  2093 tggtggataatttttcatctgcacatcaggatgttacagagtttgggataattattcataattgtaaaattatctttgaacgatattatgtgaactctag 1994  T
Q  120 tgttgagtttgtaagaagacaagcaaatgagacagctcatagattagttaaggtggtcatgtcctcaactagtttctagattttggtagaaataccatat 219  Q
    |||||| ||||| || ||||||||||||||| || ||| |||||||| ||||  || ||  |||||| |||||||| | |||||||| ||||| ||||||    
T  1993 tgttgaatttgtgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagtttccaaattttggtcgaaatcccatat 1894  T
Q  220 t 220  Q
    |    
T  1893 t 1893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University