View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_71 (Length: 253)
Name: NF1783_low_71
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 36 - 243
Target Start/End: Original strand, 42822177 - 42822395
Alignment:
| Q |
36 |
gcaagccaaccaagtattgaacaagagttgttttggaagaagaa-----------gaattgaacaagacaacaagcacatcaaattatcaacaaaacggg |
124 |
Q |
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| T |
42822177 |
gcaagccaaccaagtattgaacaagagttgttttggaagaagaaagaaaacagaagaattgaacaagacaacaagcacatcaaattatcaaaaaaacggg |
42822276 |
T |
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| Q |
125 |
ctaatttttctcatcaacgattatgattcttcatatataaaaaattacacatgaataaaagtaaccagacaacaaattatgtcgctaattgataaaccac |
224 |
Q |
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| T |
42822277 |
ctaatttttctcatcaacgattatgattcttcatatataaaaaattacacatgaataaaagtaactagacaacaaattatgtcgctaattgataaaccac |
42822376 |
T |
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| Q |
225 |
ttcaccaataagaataatc |
243 |
Q |
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|| |||||||||| ||||| |
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| T |
42822377 |
ttaaccaataagactaatc |
42822395 |
T |
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