View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_74 (Length: 251)

Name: NF1783_low_74
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_74
NF1783_low_74
[»] scaffold0209 (4 HSPs)
scaffold0209 (18-251)||(9358-9591)
scaffold0209 (18-251)||(22812-23045)
scaffold0209 (18-62)||(5228-5272)
scaffold0209 (18-62)||(18682-18726)
[»] chr8 (3 HSPs)
chr8 (126-251)||(115065-115190)
chr8 (126-243)||(607283-607400)
chr8 (134-238)||(178613-178717)


Alignment Details
Target: scaffold0209 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 9358 - 9591
Alignment:
Q  18 atatctaatcaacgacgcaacaaaagttgaaagacgtggaatattagagttgcgatccaaactattttagaaaagcttctccttaatttacccctagcag 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9358 atatctaatcaacgacgcaacaaaagttgaaagacgcggaatattagagttgcgatccaagctattttagaaaagcttctccttaatttacccctagcag 9457  T
Q  118 ttctccaatgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagactgttaacaagattcgccaattcctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9458 ttctccaatgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagaccgttaacaagattcgccaattcctc 9557  T
Q  218 gtcacttcctagttcgtgcacaatcacttctttc 251  Q
    ||||||||||||||||||||||||||||||||||    
T  9558 gtcacttcctagttcgtgcacaatcacttctttc 9591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 22812 - 23045
Alignment:
Q  18 atatctaatcaacgacgcaacaaaagttgaaagacgtggaatattagagttgcgatccaaactattttagaaaagcttctccttaatttacccctagcag 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22812 atatctaatcaacgacgcaacaaaagttgaaagacgcggaatattagagttgcgatccaagctattttagaaaagcttctccttaatttacccctagcag 22911  T
Q  118 ttctccaatgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagactgttaacaagattcgccaattcctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22912 ttctccaatgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagaccgttaacaagattcgccaattcctc 23011  T
Q  218 gtcacttcctagttcgtgcacaatcacttctttc 251  Q
    ||||||||||||||||||||||||||||||||||    
T  23012 gtcacttcctagttcgtgcacaatcacttctttc 23045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 5228 - 5272
Alignment:
Q  18 atatctaatcaacgacgcaacaaaagttgaaagacgtggaatatt 62  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  5228 atatctaatcaacgacgcaacaaaagttgaaagacgcggattatt 5272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 18682 - 18726
Alignment:
Q  18 atatctaatcaacgacgcaacaaaagttgaaagacgtggaatatt 62  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  18682 atatctaatcaacgacgcaacaaaagttgaaagacgcggattatt 18726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 115065 - 115190
Alignment:
Q  126 tgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagactgttaacaagattcgccaattcctcgtcacttc 225  Q
    ||||||| |||||| |||||||||||| |||||||||| |||||  |||||| ||||||||||||| ||||||||||  | |  ||||||||||  ||||    
T  115065 tgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcatagattgttaacaaggcttgttaattcctcgttgcttc 115164  T
Q  226 ctagttcgtgcacaatcacttctttc 251  Q
    | || |||||||||||||||||||||    
T  115165 ccagatcgtgcacaatcacttctttc 115190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 607400 - 607283
Alignment:
Q  126 tgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagactgttaacaagattcgccaattcctcgtcacttc 225  Q
    ||||||| |||||| |||||||||||| ||||||||||||||||| |||||| ||||||| ||| | || |||||||| |||  ||||||||||  ||||    
T  607400 tgttcattaagatcttccataagttggtaataacacgatgaattcgtcacaacatgtttggataaattgataacaagactcgttaattcctcgtggcttc 607301  T
Q  226 ctagttcgtgcacaatca 243  Q
    ||||||| ||||||||||    
T  607300 ctagttcatgcacaatca 607283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 178717 - 178613
Alignment:
Q  134 aagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagactgttaacaagattcgccaattcctcgtcacttcctagttcg 233  Q
    |||||| || ||||||||| ||||||| ||||||||  |||||| |||||||||||| |||||||||||  ||| |||||||||||| ||||| ||||||    
T  178717 aagatcttctataagttggtaataacatgatgaatttgtcacaacatgtttgcataggctgttaacaagtgtcgtcaattcctcgtcgcttcccagttcg 178618  T
Q  234 tgcac 238  Q
    |||||    
T  178617 tgcac 178613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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