View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1783_low_76 (Length: 250)
Name: NF1783_low_76
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_76 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 54572354 - 54572532
Alignment:
| Q |
16 |
tttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgggatagaatttcattgcaaaatgcatagggtctccatgaatcattggt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54572354 |
tttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgggatagaatttcattgcaaaatgcatagggtctccatgaatcattggt |
54572453 |
T |
|
| Q |
116 |
taggactgacaaatctatatcattgattttcattcctccatgaat-ccccattcacactttctcagttatcaaaaatac |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54572454 |
taggactgacaaatctatatcattgattttcattcctccatgaatcccccattcacactttctcagttatcaaaaatac |
54572532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 55155621 - 55155799
Alignment:
| Q |
16 |
tttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgggatagaatttcattgcaaaatgcatagggtctccatgaatcattggt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55155621 |
tttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgggatagaatttcattgcaaaatgcatagggtctccatgaatcattggt |
55155720 |
T |
|
| Q |
116 |
taggactgacaaatctatatcattgattttcattcctccatgaatcc-ccattcacactttctcagttatcaaaaatac |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55155721 |
taggactgacaaatctatatcattgattttcattcctccatgaatcctccattcacactttctcagttatcaaaaatac |
55155799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 4097269 - 4097355
Alignment:
| Q |
106 |
aatcattggttaggactgacaaatctatatcattgattttcattcctccatgaatccccattcacactttctcagttatcaaaaata |
192 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||| ||||||| | |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
4097269 |
aatcattgattaggactgagaaatctaaatcattgattttgattcctcaaagaatccccattcacgctttctgagttatcaaaaata |
4097355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University