View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_78 (Length: 249)
Name: NF1783_low_78
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 8880821 - 8881030
Alignment:
| Q |
23 |
ttgcagtagcccgaacatacaccacccgcctcaaaccatcggccaccaaaatcgattttctggcatttttactctgaaaaccgaatgtgatggtcgatgg |
122 |
Q |
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| T |
8880821 |
ttgcagtagcccgaacatacaccacccgcctcaaaccatcggccaccaaaatcgattttctggcatttttactctgtaaaccgaatgtgatggtcgatgg |
8880920 |
T |
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| Q |
123 |
agtaattgaaggtgtggagttgagagaggttactggaagtgtgtttatgtggagaagttggttgaggtttgagagagaggccattttctttcttgaatta |
222 |
Q |
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| T |
8880921 |
agtaattgaaggtgtggagttgagagaggttactggaagtgtgtttatgtggagaagttggttgaggtttgagagagaggccattttctttcttgaatta |
8881020 |
T |
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| Q |
223 |
agagagaata |
232 |
Q |
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| T |
8881021 |
agagagaata |
8881030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 8884932 - 8885135
Alignment:
| Q |
29 |
tagcccgaacatacaccacccgcctcaaaccatcggccaccaaaatcgattttctggcatttttactctgaaaaccgaatgtgatggtcgatggagtaat |
128 |
Q |
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| T |
8884932 |
tagcctgaacatacaccacccgcctcaaaccatcggccaacacaatcggttttctgacatgtttgttcagaaaaccgactgtgatggtcgacggagaaat |
8885031 |
T |
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| Q |
129 |
tgaaggtgtggagttgagagaggttactggaagtgtgtttatgtggagaagttggttgaggtttgagagagaggccattttcttt-cttgaattaagaga |
227 |
Q |
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| T |
8885032 |
tgaaggtgtggagttgagagaggttactggaagagtgtttgtatggagaagttggtttaggtttgatagagaggccattttttttagttgaattcagaga |
8885131 |
T |
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| Q |
228 |
gaat |
231 |
Q |
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|||| |
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| T |
8885132 |
gaat |
8885135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 45073963 - 45074159
Alignment:
| Q |
35 |
gaacatacaccacccgcctcaaaccatcggccaccaaaatcgattttctggcatttttactctgaaaaccgaatgtgatggtcgatggagtaattgaagg |
134 |
Q |
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| T |
45073963 |
gaacatacgccatccgcctaaaaccatcggccaacacaatcggtcttctggcatgtttgctcagaaaaccgaatgtgatggtcaatggagaaattgaagg |
45074062 |
T |
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| Q |
135 |
tgtggagttgagagaggttactggaagtgtgtttatgtggagaagttggttgaggtttgagagagaggccattttctttcttgaattaagagagaat |
231 |
Q |
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| T |
45074063 |
tgtggagttgagagaggttactggaagtgtgtttatgtggagaagttagttgaggtttgatagagaggccattttctttcttgaattcagagagaat |
45074159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 4341702 - 4341848
Alignment:
| Q |
85 |
gcatttttactctgaaaaccgaatgtgatggtcgatggagtaattgaaggtgtggagttgagagaggttactggaagtgtgtttatgtggagaagttggt |
184 |
Q |
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|||| ||| ||| ||||| ||| | ||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
4341702 |
gcatgtttgctcagaaaatcgactctgatggtcggtggagaaattgaagttgtggagttgagagaggttactggaagggtgtttgtgtggagaagttggt |
4341801 |
T |
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| Q |
185 |
tgaggtttgagagagaggccattttctttcttgaattaagagagaat |
231 |
Q |
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| T |
4341802 |
tgaggtttgagagagaggccattttctttgttgaattaaaagagaat |
4341848 |
T |
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