View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_8 (Length: 603)

Name: NF1783_low_8
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_8
NF1783_low_8
[»] chr7 (16 HSPs)
chr7 (71-588)||(25541880-25542397)
chr7 (60-188)||(1049685-1049814)
chr7 (71-187)||(35379-35496)
chr7 (62-187)||(26804345-26804471)
chr7 (71-187)||(44314-44431)
chr7 (71-187)||(3878322-3878439)
chr7 (71-190)||(27306651-27306770)
chr7 (62-187)||(40837135-40837261)
chr7 (71-187)||(18567363-18567480)
chr7 (71-187)||(31435469-31435586)
chr7 (71-187)||(1047386-1047503)
chr7 (71-187)||(2935070-2935187)
chr7 (71-187)||(9027570-9027687)
chr7 (71-187)||(22136878-22136995)
chr7 (71-187)||(40551905-40552022)
chr7 (73-151)||(24526366-24526444)
[»] chr6 (18 HSPs)
chr6 (192-503)||(11980274-11980568)
chr6 (71-191)||(8995251-8995372)
chr6 (71-191)||(9019698-9019819)
chr6 (249-467)||(11980634-11980840)
chr6 (60-187)||(32279794-32279921)
chr6 (71-188)||(15530544-15530662)
chr6 (71-187)||(19227831-19227948)
chr6 (97-189)||(1072304-1072397)
chr6 (71-131)||(4816689-4816749)
chr6 (71-187)||(14507597-14507716)
chr6 (71-187)||(33308685-33308802)
chr6 (71-187)||(33310954-33311071)
chr6 (71-187)||(26066494-26066611)
chr6 (71-187)||(26068765-26068882)
chr6 (487-535)||(11978944-11978992)
chr6 (71-187)||(29755162-29755279)
chr6 (71-183)||(11983451-11983562)
chr6 (290-377)||(11979066-11979154)
[»] chr8 (17 HSPs)
chr8 (62-189)||(4423833-4423961)
chr8 (71-189)||(12517448-12517567)
chr8 (71-187)||(27826782-27826899)
chr8 (71-187)||(27829093-27829210)
chr8 (71-183)||(28252009-28252122)
chr8 (71-187)||(15072506-15072623)
chr8 (71-187)||(44720617-44720735)
chr8 (71-187)||(15067777-15067894)
chr8 (71-187)||(18812668-18812785)
chr8 (71-183)||(14807552-14807665)
chr8 (71-187)||(18810483-18810600)
chr8 (71-187)||(43079347-43079464)
chr8 (71-187)||(43081722-43081839)
chr8 (62-140)||(3886313-3886392)
chr8 (13-85)||(18812792-18812864)
chr8 (13-85)||(18810607-18810679)
chr8 (15-45)||(44720782-44720812)
[»] chr4 (34 HSPs)
chr4 (71-187)||(31850021-31850138)
chr4 (71-187)||(9148054-9148171)
chr4 (71-187)||(36920009-36920125)
chr4 (71-187)||(22044811-22044930)
chr4 (71-188)||(36921917-36922034)
chr4 (71-184)||(5198217-5198331)
chr4 (63-187)||(7941133-7941259)
chr4 (71-187)||(5637890-5638006)
chr4 (62-187)||(11434769-11434896)
chr4 (66-151)||(22801257-22801342)
chr4 (71-183)||(24888594-24888707)
chr4 (71-187)||(38408993-38409110)
chr4 (71-187)||(3824995-3825112)
chr4 (71-187)||(48486113-48486230)
chr4 (71-151)||(22803155-22803235)
chr4 (71-187)||(18846923-18847042)
chr4 (71-187)||(11006663-11006781)
chr4 (105-187)||(22048493-22048575)
chr4 (71-187)||(16932243-16932360)
chr4 (71-187)||(9174568-9174684)
chr4 (71-188)||(16934597-16934715)
chr4 (71-188)||(22783200-22783318)
chr4 (71-187)||(9176918-9177035)
chr4 (71-187)||(22780835-22780952)
chr4 (71-185)||(51015042-51015157)
chr4 (71-182)||(52942890-52943002)
chr4 (97-188)||(619895-619987)
chr4 (71-185)||(40091837-40091952)
chr4 (71-183)||(37089796-37089910)
chr4 (71-135)||(24878836-24878900)
chr4 (15-45)||(11006585-11006615)
chr4 (15-45)||(11008936-11008966)
chr4 (92-134)||(24880299-24880341)
chr4 (71-108)||(11009014-11009051)
[»] chr3 (31 HSPs)
chr3 (60-187)||(11162891-11163019)
chr3 (71-187)||(1321161-1321278)
chr3 (60-187)||(11170145-11170273)
chr3 (71-187)||(5523035-5523152)
chr3 (71-187)||(26720268-26720385)
chr3 (71-186)||(5191374-5191490)
chr3 (71-187)||(10956447-10956563)
chr3 (71-187)||(18099590-18099707)
chr3 (71-187)||(18097305-18097422)
chr3 (60-151)||(6719521-6719614)
chr3 (71-189)||(50493674-50493793)
chr3 (62-187)||(35777163-35777289)
chr3 (71-192)||(53896637-53896759)
chr3 (62-187)||(48362060-48362186)
chr3 (71-187)||(24176999-24177116)
chr3 (60-189)||(38889755-38889886)
chr3 (71-151)||(10192413-10192492)
chr3 (71-187)||(22114725-22114842)
chr3 (62-187)||(32218836-32218962)
chr3 (71-187)||(38210067-38210184)
chr3 (71-136)||(10085493-10085557)
chr3 (105-188)||(32264498-32264581)
chr3 (15-130)||(6066139-6066254)
chr3 (105-187)||(7606881-7606963)
chr3 (71-150)||(5899497-5899576)
chr3 (15-45)||(6063812-6063842)
chr3 (71-187)||(6063889-6064006)
chr3 (105-151)||(9666947-9666993)
chr3 (15-45)||(35777306-35777336)
chr3 (15-45)||(38889902-38889932)
chr3 (71-131)||(25388654-25388714)
[»] scaffold0250 (1 HSPs)
scaffold0250 (71-187)||(2629-2746)
[»] chr5 (28 HSPs)
chr5 (71-187)||(38881845-38881962)
chr5 (13-187)||(34479797-34479972)
chr5 (62-187)||(659713-659838)
chr5 (71-183)||(4236374-4236487)
chr5 (62-187)||(31466370-31466496)
chr5 (71-187)||(34477515-34477632)
chr5 (71-187)||(16775897-16776014)
chr5 (64-189)||(25921867-25921994)
chr5 (62-187)||(2174680-2174806)
chr5 (97-187)||(20504361-20504452)
chr5 (92-188)||(18186491-18186588)
chr5 (62-187)||(39797849-39797975)
chr5 (62-187)||(12556315-12556441)
chr5 (92-187)||(21947770-21947866)
chr5 (97-187)||(20507910-20508001)
chr5 (71-187)||(31544798-31544915)
chr5 (71-187)||(2818729-2818847)
chr5 (71-187)||(31542442-31542559)
chr5 (72-133)||(659869-659929)
chr5 (62-149)||(36402719-36402806)
chr5 (58-187)||(38960474-38960604)
chr5 (71-187)||(10749505-10749622)
chr5 (71-187)||(15354948-15355065)
chr5 (71-187)||(15357224-15357341)
chr5 (62-185)||(6756257-6756381)
chr5 (124-187)||(21684905-21684969)
chr5 (13-45)||(34477436-34477468)
chr5 (16-45)||(31542607-31542636)
[»] chr1 (27 HSPs)
chr1 (71-188)||(15823285-15823403)
chr1 (71-187)||(28840418-28840535)
chr1 (60-187)||(6822775-6822904)
chr1 (71-187)||(28842233-28842350)
chr1 (71-187)||(10400252-10400369)
chr1 (71-187)||(13761577-13761694)
chr1 (15-151)||(16231378-16231514)
chr1 (64-187)||(49687301-49687425)
chr1 (71-187)||(51749778-51749896)
chr1 (71-187)||(51752104-51752222)
chr1 (79-187)||(3580050-3580159)
chr1 (105-185)||(38925915-38925996)
chr1 (71-187)||(47177078-47177194)
chr1 (97-188)||(39462257-39462349)
chr1 (71-187)||(47179428-47179545)
chr1 (98-187)||(47451405-47451495)
chr1 (92-151)||(13214858-13214917)
chr1 (71-150)||(6823661-6823741)
chr1 (71-183)||(16225891-16226004)
chr1 (71-187)||(20302198-20302316)
chr1 (71-187)||(30790818-30790935)
chr1 (83-190)||(20291277-20291386)
chr1 (71-187)||(23783238-23783355)
chr1 (62-151)||(14098363-14098452)
chr1 (152-188)||(13461357-13461393)
chr1 (121-187)||(14098443-14098510)
chr1 (141-188)||(41646680-41646728)
[»] chr2 (14 HSPs)
chr2 (71-187)||(42064231-42064348)
chr2 (71-187)||(21521117-21521234)
chr2 (62-187)||(43623959-43624085)
chr2 (68-182)||(6264543-6264658)
chr2 (71-184)||(6259237-6259351)
chr2 (71-187)||(40032469-40032586)
chr2 (65-187)||(18800696-18800819)
chr2 (71-187)||(24162634-24162752)
chr2 (71-183)||(27104519-27104632)
chr2 (71-187)||(19502433-19502550)
chr2 (71-187)||(22407831-22407948)
chr2 (71-150)||(19504767-19504846)
chr2 (71-187)||(36559241-36559358)
chr2 (71-187)||(45332558-45332675)
[»] scaffold0025 (2 HSPs)
scaffold0025 (62-183)||(73418-73540)
scaffold0025 (71-183)||(69716-69829)
[»] scaffold0131 (1 HSPs)
scaffold0131 (71-186)||(14768-14885)
[»] scaffold0127 (1 HSPs)
scaffold0127 (71-187)||(12937-13054)
[»] scaffold0472 (1 HSPs)
scaffold0472 (71-187)||(5927-6044)
[»] scaffold0140 (2 HSPs)
scaffold0140 (71-187)||(21915-22032)
scaffold0140 (71-187)||(24190-24307)
[»] scaffold0068 (1 HSPs)
scaffold0068 (124-187)||(28941-29005)


Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 71 - 588
Target Start/End: Complemental strand, 25542397 - 25541880
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgatt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25542397 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgatt 25542298  T
Q  171 ttaagttaactctcacataaagaaatgaaataattgtacgtaatcatatctcagcgtcgcgttagttacatcagaaacgccttcaaactgaggtattggt 270  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  25542297 ttaagttaactctcacatgaagaaatgaaataattgtacgtaatcatatcttagcgtcgcgttagttacatcagaagcgccttcaaactgaggtattggt 25542198  T
Q  271 gctagatagattttctctgttgatgaaattctatggtttgaatattgatttgtgtagttcatgatataatgaacctgtctggtctgatacggatgttgtt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25542197 gctagatagattttctctgttgatgaaattctatggtttgaatattgatttgtgtagttcatgatataatgaacctgtctggtctgatacggatgttgtt 25542098  T
Q  371 gattttttgtatggattgttgatacttgattgcaagtttctattttagatatgatgtggttgtttctagtagttgagtttgtgaaatggatacatttatt 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25542097 gattttttgtatggattgttgatacttgattgcaagtttctattttagatatgatgtggttgtttctagtagttgagtttgtgaaatggatacatttatt 25541998  T
Q  471 gtaaccttgacctttgatgaaattttatcggttggaaatatatttgtgtagtttatgatataatggtgttgattttagatacattgtgaccgtaggattg 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25541997 gtaaccttgacctttgatgaaattttatcggttggaaatatatttgtgtagtttatgatataatggtgttgattttagatacattgtgactgtaggattg 25541898  T
Q  571 ctgattgtagttctaact 588  Q
    ||||||||||||||||||    
T  25541897 ctgattgtagttctaact 25541880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 1049685 - 1049814
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctg 158  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1049685 ccgccagcgcaccttcgtgccacgatttttccagtaccttgcttcaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattcctg 1049784  T
Q  159 cagatcttgattttaagttaactctcacat 188  Q
    ||||||||||||||||||||||||||||||    
T  1049785 cagatcttgattttaagttaactctcacat 1049814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 35496 - 35379
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| ||||| |||||| |||  ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  35496 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagcaatcgtgccacgattcctgcagatcttgat 35397  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  35396 tttaagttaactctcaca 35379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 26804471 - 26804345
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag 161  Q
    ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||  | ||| ||    
T  26804471 gccagcgcaccatcgtgccacgatttttccactgccttgcctcaaaactgaaacctccaatcgtaccacgttgcccagccatcgtgccacgattctgtag 26804372  T
Q  162 -atcttgattttaagttaactctcaca 187  Q
     | | ||||||||||||||||||||||    
T  26804371 aaacctgattttaagttaactctcaca 26804345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 44431 - 44314
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||||||| |||||||| ||||| |||| | |||  ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  44431 ccatcgtgccatgatttttccagtgctttgcgtcaaacttgaaacctccaatcgtgccacattgcccagaaatcgtgccacgattcctgcagatcttgat 44332  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  44331 tttaagttaactctcaca 44314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 3878439 - 3878322
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgat 169  Q
    |||||||||||||||||||| ||||| |||||| |||  ||||||||||||||||||||||||||||||| ||||||||||  | |||||||  | ||||    
T  3878439 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgat 3878340  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  3878339 tttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 27306651 - 27306770
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgatt 170  Q
    |||||||||||||||||||| | || ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||  |  |||| | | | |||    
T  27306651 ccatcgtgccacgatttttccaatgacttgcctcaaaactgaaacctccaatcgtgccacgttgtccagccatcgtgccacgattttgcaaaaccttatt 27306750  T
Q  171 ttaagttaactctcacataa 190  Q
    ||||||||||||||||||||    
T  27306751 ttaagttaactctcacataa 27306770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 40837135 - 40837261
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgca 160  Q
    |||||| |||||||||||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||| ||  | ||||||||||  | |||||    
T  40837135 gccagcacaccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctcc-atcgtgccacgttgtccgaccatcgtgccacgattctgca 40837233  T
Q  161 g-atcttgattttaagttaactctcaca 187  Q
    | | | ||||||||||||||||||||||    
T  40837234 gaaacctgattttaagttaactctcaca 40837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 18567480 - 18567363
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||||||||||    || |||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||| ||| | ||||    
T  18567480 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccactttgcccagctatcgtgccacgatttctgtagaacctgat 18567381  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||| ||||||||||    
T  18567380 tttaagtcaactctcaca 18567363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 31435469 - 31435586
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||||||||||    || |||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||| ||| | ||||    
T  31435469 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccactttgcccagctatcgtgccacgatttctgtagaacctgat 31435568  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||| ||||||||||    
T  31435569 tttaagtcaactctcaca 31435586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 1047386 - 1047503
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| ||||||||||||||||||||  |||||||||  | |||||| | | |||    
T  1047386 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctga 1047484  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  1047485 ttttaagttaactctcaca 1047503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 2935187 - 2935070
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  2935187 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctga 2935089  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  2935088 ttttaagttaactctcaca 2935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 9027570 - 9027687
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  9027570 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctga 9027668  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  9027669 ttttaagttaactctcaca 9027687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 22136995 - 22136878
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  22136995 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctga 22136897  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  22136896 ttttaagttaactctcaca 22136878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 40552022 - 40551905
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  40552022 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctga 40551924  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  40551923 ttttaagttaactctcaca 40551905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 24526366 - 24526444
Alignment:
Q  73 atcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac 151  Q
    |||||||||||||||||| |||| |   ||  ||| ||||| | ||||||||||||||||||||| |||| ||||||||    
T  24526366 atcgtgccacgatttttccagtgacaaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccac 24526444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 3e-59; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 192 - 503
Target Start/End: Complemental strand, 11980568 - 11980274
Alignment:
Q  192 gaaatgaaataattgtacgtaatcatatctcagcgtcgcgttagttacatcagaaacgccttcaaactgaggtattggtgctagatagattttctctgtt 291  Q
    ||||||||||||||| || ||| ||| ||| ||  ||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||| | |||    
T  11980568 gaaatgaaataattgaacataaccatgtcttag--tcgtgttagttacatcagacacaccttcaatctgaggtattggtgctagatagattttcaccgtt 11980471  T
Q  292 gatgaaattctatggtttgaatattgatttgtgtagttcatgatataatgaacctgtctggtctgatacggatgttgttgattttttgtatggattgttg 391  Q
    ||||||||||||| |||||||||||| ||| ||||||| ||||| |||||||||||| |||||||||| | ||||||||||  ||||||||||||||       
T  11980470 gatgaaattctatagtttgaatattggtttctgtagtttatgatgtaatgaacctgtttggtctgatatgaatgttgttga--ttttgtatggattg--- 11980376  T
Q  392 atacttgattgcaagtttctattttagatatgatgtggttgtttctagtagttgagtttgtgaaatggatacatttattgtaaccttgacctttgatgaa 491  Q
        |||||||| ||||| |||| ||||||||||| |||||||||||       |||||| |||| |||| ||||| ||||||||||| || ||||||||    
T  11980375 ----ttgattgcgagtttatattatagatatgatgcggttgtttcta------tagtttgggaaagggattcatttgttgtaaccttgtccattgatgaa 11980286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 8995372 - 8995251
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| ||||    
T  8995372 ccatcgtgccacgatttttccagtgccttgcccaaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctacagatcctgat 8995273  T
Q  170 tttaagttaactctcacataaa 191  Q
    ||||||||||||||||||||||    
T  8995272 tttaagttaactctcacataaa 8995251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 9019819 - 9019698
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| ||||    
T  9019819 ccatcgtgccacgatttttccagtgccttgcccaaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctacagatcctgat 9019720  T
Q  170 tttaagttaactctcacataaa 191  Q
    ||||||||||||||||||||||    
T  9019719 tttaagttaactctcacataaa 9019698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 249 - 467
Target Start/End: Complemental strand, 11980840 - 11980634
Alignment:
Q  249 gccttcaaactgaggtattggtgctagatagattttctctgttgatgaaattctatggtttgaatattgatttgtgtagttcatgatataatgaacctgt 348  Q
    |||||||| ||||||||||||||||| |||||||||  | |||||||| | ||||| ||||||||||||       ||||||||||||||||||||||||    
T  11980840 gccttcaatctgaggtattggtgctacatagattttgaccgttgatgagaatctatagtttgaatattg-------tagttcatgatataatgaacctgt 11980748  T
Q  349 ctggtctgatacggatgttgttgattttttgtatggattgttgatacttgattgcaagtttctattttagatatgatgtggttgtttc---tagtagttg 445  Q
     ||||| ||| || |||||||||||||||||||||||||||       ||||||||||||| |||| |||| ||||||| ||||||||   |||||||||    
T  11980747 ttggtcagatgcgaatgttgttgattttttgtatggattgt-------tgattgcaagtttatattatagagatgatgttgttgtttctaatagtagttg 11980655  T
Q  446 agtttgtgaaatggatacattt 467  Q
    || ||| ||||||||| |||||    
T  11980654 ag-ttgggaaatggattcattt 11980634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 32279921 - 32279794
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctg 158  Q
    ||||||||||||||||||||||||| ||||| || | ||||||| | ||||||||| |||||||||||||||||||||| |||||||| |||  ||||||    
T  32279921 ccgccagcgcaccatcgtgccacgacttttccagcgacttgcctcagaactgaaacatccaatcgtgccacgttgcccaacaatcgtgtcacgtttcctg 32279822  T
Q  159 cagatcttgattttaagttaactctcaca 187  Q
    |||| | ||||||||||||||||||||||    
T  32279821 cagaac-tgattttaagttaactctcaca 32279794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 15530544 - 15530662
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||| |||||| ||||| ||||| |||||| |||  ||||||||||||| |||||||||| |||||| |||||||||| ||||||||||||| ||||    
T  15530544 ccatcgtaccacgaattttcgagtgctttgcctcaaacttgaaacctccaattgtgccacgttacccagccatcgtgccacgattcctgcagatcctgat 15530643  T
Q  170 tttaagttaactctcacat 188  Q
    |||||||||||||||||||    
T  15530644 tttaagttaactctcacat 15530662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 19227831 - 19227948
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaact-gaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttga 168  Q
    |||||||||||||||||||| |||||||||||| |||| | |||||||||| || |||||||||||||| | |||||||||| ||||||||||||||| |    
T  19227831 ccatcgtgccacgatttttccagtgccttgcctcaaaaattgaaacctcca-tcatgccacgttgcccaaccatcgtgccacgattcctgcagatcttaa 19227929  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  19227930 ttttaagttaactctcaca 19227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 1072304 - 1072397
Alignment:
Q  97 cttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacata 189  Q
    ||||||| |||||| ||||||||||||||||||||||||||| | ||||| |||| ||| ||||||| | ||||||||||||||||||||||||    
T  1072304 cttgcctcaaaacttaaacctccaatcgtgccacgttgcccaaccatcgtaccacgatttctgcagaacctgattttaagttaactctcacata 1072397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 4816689 - 4816749
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacg 131  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||    
T  4816689 ccatcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacg 4816749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 14507597 - 14507716
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg---ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-t 166  Q
    |||||||||||| ||||||| |||||||||   |   ||||||||||||||| |||||||||||||||||||| ||||||||||  | |||||||  | |    
T  14507597 ccatcgtgccaccatttttccagtgccttgtatcaaaaaaactgaaacctcc-atcgtgccacgttgcccagccatcgtgccacgattctgcagaaatct 14507695  T
Q  167 gattttaagttaactctcaca 187  Q
    |||||||||||||||||||||    
T  14507696 gattttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 33308802 - 33308685
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||||||  |||||||  |||||||||  | |||||| | | |||    
T  33308802 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgaagcccagccgtcgtgccacgattctgcagaaacctga 33308704  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  33308703 ttttaagttaactctcaca 33308685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 33311071 - 33310954
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||||||  |||||||  |||||||||  | |||||| | | |||    
T  33311071 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgaagcccagccgtcgtgccacgattctgcagaaacctga 33310973  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  33310972 ttttaagttaactctcaca 33310954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 26066494 - 26066611
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaa-aactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| |||||||||||  || |||| |||||||| ||||||||||||||||  ||  |||||||||  | || ||| | | |||    
T  26066494 ccatcgtgccacgatttttccagtgccttgcccaaataactaaaacctcc-atcgtgccacgttgccttgccgtcgtgccacgattctacagaaacctga 26066592  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  26066593 ttttaagttaactctcaca 26066611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 26068765 - 26068882
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| ||| ||||||||||||  ||  |||||||||  | |||||| | | |||    
T  26068765 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcatgccacgttgccttgccgtcgtgccacgattctgcagaaacctga 26068863  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  26068864 ttttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 535
Target Start/End: Complemental strand, 11978992 - 11978944
Alignment:
Q  487 atgaaattttatcggttggaaatatatttgtgtagtttatgatataatg 535  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  11978992 atgaaattttatcggttgtaaattgatttgtgtagtttatgatataatg 11978944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 29755162 - 29755279
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  29755162 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctga 29755260  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  29755261 ttttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 11983451 - 11983562
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgat 169  Q
    |||||||||||||||||||| |||| ||| ||| | ||||||||||||| ||||| ||| |||||||| | ||||| ||||  | |||||| | | ||||    
T  11983451 ccatcgtgccacgatttttccagtg-cttacctcacaactgaaacctcc-atcgtaccatgttgcccaaccatcgtaccacgattctgcagaaacctgat 11983548  T
Q  170 tttaagttaactct 183  Q
    ||||||||||||||    
T  11983549 tttaagttaactct 11983562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 377
Target Start/End: Complemental strand, 11979154 - 11979066
Alignment:
Q  290 ttgatgaaattctatggtttgaatattgattt-gtgtagttcatgatataatgaacctgtctggtctgatacggatgttg-ttgattttt 377  Q
    |||||||| || ||| | |||||||||||||| |||||||| ||||||||||||| | || || ||||||| |||||||| |||||||||    
T  11979154 ttgatgaagttttattggttgaatattgattttgtgtagtttatgatataatgaatc-gtttgatctgatatggatgttgattgattttt 11979066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 4423961 - 4423833
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgca 160  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  4423961 gccagcgcaccatcgtgccacgatttttccagtgccttgccttaaaactgaaacctccaattgtgccacgttgcccagcaattgtgccacgattcctgca 4423862  T
Q  161 gatcttgattttaagttaactctcacata 189  Q
    |||||||||||||||||||||||||||||    
T  4423861 gatcttgattttaagttaactctcacata 4423833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 12517448 - 12517567
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||  || |||||||||| ||||||||||||| ||||    
T  12517448 ccatcgtgccacgatttttccagtacattgcctcaaaactgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcagatcctgat 12517547  T
Q  170 tttaagttaactctcacata 189  Q
    ||||||||||||||||||||    
T  12517548 tttaagttaactctcacata 12517567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 27826899 - 27826782
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaac-tgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttga 168  Q
    |||||||||||||||||||| ||||| |||| | ||||  ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||    
T  27826899 ccatcgtgccacgatttttccagtgctttgcttcaaaaaatgaaacctcca-tcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcctga 27826801  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  27826800 ttttaagttaactctcaca 27826782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 27829210 - 27829093
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaac-tgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttga 168  Q
    |||||||||||||||||||| ||||  |||||| ||||  ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||    
T  27829210 ccatcgtgccacgatttttccagtgttttgcctcaaaaaatgaaacctcca-tcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcctga 27829112  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  27829111 ttttaagttaactctcaca 27829093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 28252009 - 28252122
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| ||||| |||||| |||  |||||||||||||||| |||||||||| ||| |||||||||| ||||||||||||| ||||    
T  28252009 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtaccacgttgcctagccatcgtgccacgattcctgcagatcctgat 28252108  T
Q  170 tttaagttaactct 183  Q
    ||||||||||||||    
T  28252109 tttaagttaactct 28252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 15072623 - 15072506
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||| ||||||||||| |||| ||||| | |||||||||||||||||||||| ||||||||||||| |||||| ||| |||||||||||   ||||    
T  15072623 ccatcgtgacacgatttttctagtggcttgcttcaaaactgaaacctccaatcgtgtcacgttgcccagccatcgtgtcacgattcctgcagaatctgat 15072524  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  15072523 tttaagttaactctcaca 15072506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 44720735 - 44720617
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag--atcttga 168  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||  |||||||||||| ||||||  | ||||||  | | |||    
T  44720735 ccatcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaaacgtgccacaatgcccagcaatcatgccacgattctgcagaaaacctga 44720636  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  44720635 ttttaagttaactctcaca 44720617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 15067894 - 15067777
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||| || |||||||| |||| ||||| | ||||||||||||||||||||||||| |||||||||| ||| |||||| ||||||||| |   ||||    
T  15067894 ccatcgtggcatgatttttccagtggcttgcttcaaaactgaaacctccaatcgtgccatgttgcccagccatcttgccacgattcctgcaaaatctgat 15067795  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||| ||||||    
T  15067794 tttaagttaacactcaca 15067777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 18812785 - 18812668
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||||||  |||||| |||||||| ||||||||||||||||||||  |||||||||  | || ||| | | |||    
T  18812785 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctcc-atcgtgccacgttgcccagccgtcgtgccacgattcttcagaaacctga 18812687  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  18812686 ttttaagttaactctcaca 18812668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 14807665 - 14807552
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgat 169  Q
    |||||||||||||||||||| ||||| |||||| |||  ||||||||||||||||| ||||||||||| | ||| ||||||  | |||||| | | ||||    
T  14807665 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgtcacgttgcccaaccatcatgccacgattctgcagaaacctgat 14807566  T
Q  170 tttaagttaactct 183  Q
    ||||||||||||||    
T  14807565 tttaagttaactct 14807552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 18810600 - 18810483
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaac-tgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||| | ||||||| |||||||||||| ||||  | ||||||||| |||||||||||||||||||  |||||||||  | |||||| | | |||    
T  18810600 ccatcgtgccgcaatttttccagtgccttgcctaaaaaaataaaacctcca-tcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctga 18810502  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  18810501 ttttaagttaactctcaca 18810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 43079464 - 43079347
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    ||||||| |||||||||||| ||||||||| ||  |||||| |||||||| ||||||||||||||||  ||  |||||||||  | |||||| | | |||    
T  43079464 ccatcgtaccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgccttgccgtcgtgccacgattctgcagaaacctga 43079366  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  43079365 ttttaagttaactctcaca 43079347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 43081839 - 43081722
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||||| |||||  ||  |||||||||  | |||||| | | |||    
T  43081839 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccactttgccttgccgtcgtgccacgattctgcagaaacctga 43081741  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  43081740 ttttaagttaactctcaca 43081722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 3886313 - 3886392
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgcct--taaaactgaaacctccaatcgtgccacgttgcccagc 140  Q
    |||||| ||||||||| |||||||||||| |||| |||||||   ||||||||||||||| |||||||||||||| |||||    
T  3886313 gccagcacaccatcgtaccacgatttttccagtgtcttgcctcaaaaaactgaaacctcc-atcgtgccacgttgtccagc 3886392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 18812864 - 18812792
Alignment:
Q  13 tcaaaatctgtaacaaatctgcacccaaaaatannnnnnnnnnnnatccgccagcgcaccatcgtgccacgat 85  Q
    |||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||    
T  18812864 tcaaaatctgtaacaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgat 18812792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 18810679 - 18810607
Alignment:
Q  13 tcaaaatctgtaacaaatctgcacccaaaaatannnnnnnnnnnnatccgccagcgcaccatcgtgccacgat 85  Q
    ||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||    
T  18810679 tcaaaatctgtaacaaatctgcacccaaaaatgtgttttatttttatccgccagcgcaccatcgtgccacgat 18810607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 44720812 - 44720782
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  44720812 aaaatctgtaacaaatctgcacccaaaaata 44720782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 31850021 - 31850138
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||||||| |||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31850021 ccatcgtgccaagatttttccagtgccttgccccaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacaattcctgcagatcttgat 31850120  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  31850121 tttaagttaactctcaca 31850138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 9148171 - 9148054
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| ||||| |||||| |||  ||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||    
T  9148171 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgcgccacgttgcccagcaatcgtaccacgattcctgaagatcttgat 9148072  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  9148071 tttaagttaactctcaca 9148054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 36920009 - 36920125
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgatt 170  Q
    |||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||  |  |||||| | |||||    
T  36920009 ccatcgtgccacgatttttccagtgacttgcctcaaaattgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcagaacctgatt 36920108  T
Q  171 ttaagttaactctcaca 187  Q
    |||||||||||||||||    
T  36920109 ttaagttaactctcaca 36920125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 22044811 - 22044930
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaac---tgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatctt 166  Q
    |||||||||||||||||||| |||||||||||| ||||    ||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||||    
T  22044811 ccatcgtgccacgatttttccagtgccttgcctcaaaaaaaatgaaacctcca-tcgtgccacgttgcccttcaatcgtgccacgattcctgcagatctt 22044909  T
Q  167 gattttaagttaactctcaca 187  Q
    |||||||||||||||||||||    
T  22044910 gattttaagttaactctcaca 22044930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 36921917 - 36922034
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgatt 170  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||  |  |||||| | |||||    
T  36921917 ccatcgtgccacgatttttccagtgacttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtaccacgattttgcagaacctgatt 36922016  T
Q  171 ttaagttaactctcacat 188  Q
    ||||||||||||||||||    
T  36922017 ttaagttaactctcacat 36922034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 5198331 - 5198217
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgcca-cattcctgcagatcttgat 169  Q
    |||||||||||||||||||| || || |||||| |||  ||||| ||||||||||||||||||||||||||||| || ||  ||||||||||||||||||    
T  5198331 ccatcgtgccacgatttttccagagctttgcctcaaacttgaaatctccaatcgtgccacgttgcccagcaatcatgtcatgattcctgcagatcttgat 5198232  T
Q  170 tttaagttaactctc 184  Q
    |||||||||||||||    
T  5198231 tttaagttaactctc 5198217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 7941259 - 7941133
Alignment:
Q  63 ccagcgcaccatcgtgccacgatttttcaagtgccttgcct--taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgca 160  Q
    |||||||||||||||||||| ||||||| ||||||||||||   ||||||||||||||| |||||||||||||||||||| ||||||||||  | |||||    
T  7941259 ccagcgcaccatcgtgccaccatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccagccatcgtgccacgattctgca 7941161  T
Q  161 g-atcttgattttaagttaactctcaca 187  Q
    | | | ||||||||||||||||||||||    
T  7941160 gaaacctgattttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 5637890 - 5638006
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcag-atcttga 168  Q
    |||||||| || |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| | | |||    
T  5637890 ccatcgtgacatgatttttccagtgccttgcctcaaaactgaaacctcc-atcgtgccacgttgcccagcaatcgtgccacgattcc-gcagaaacctga 5637987  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  5637988 ttttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 11434896 - 11434769
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgcct--taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgc 159  Q
    ||||||||||||||||||||||||||||| |||| |||||||   ||||||||||||||| |||||||||||||||||||| ||||| ||||  | ||||    
T  11434896 gccagcgcaccatcgtgccacgatttttccagtgtcttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccagccatcgtaccacgattctgc 11434798  T
Q  160 ag-atcttgattttaagttaactctcaca 187  Q
    || | | ||||||||||||||||||||||    
T  11434797 agaaacctgattttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 22801257 - 22801342
Alignment:
Q  66 gcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac 151  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||| ||||||||||| | ||||||||||    
T  22801257 gcgcaccatcgtgccacgatttttccagttccttgcctcaaaactgaaacctccaatcgtgtcacgttgcccaaccatcgtgccac 22801342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 24888707 - 24888594
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgat 169  Q
    |||||||||||||||||||| ||||| |||||| |||  ||||||||||||||||||||||||||| ||| ||||||||||| | |||||||  | ||||    
T  24888707 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccacaattctgcagaaatctgat 24888608  T
Q  170 tttaagttaactct 183  Q
    ||||||||||||||    
T  24888607 tttaagttaactct 24888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 38409110 - 38408993
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgat 169  Q
    |||||||||||||||||||| ||||| |||||| |||  |||||||||||||||||||||| |||||||||||||||||||  | |||||||  | | ||    
T  38409110 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctaat 38409011  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  38409010 tttaagttaactctcaca 38408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 3824995 - 3825112
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgat 169  Q
    |||| |||||| |||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||| |||||| |||  | |||||| | | ||||    
T  3824995 ccattgtgccatgatttttccagtgctttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtgtcacgattctgcagaaacctgat 3825094  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  3825095 tttaagttaactctcaca 3825112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 48486230 - 48486113
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||||||||||    || |||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||||||  | ||||    
T  48486230 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccacgttgctcagccatcgtgccacgatttctgcaggacctgat 48486131  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  48486130 tttaagttaactctcaca 48486113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 22803155 - 22803235
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac 151  Q
    |||||| ||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  22803155 ccatcgagccacgatttttccagtgcctttcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccac 22803235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 18847042 - 18846923
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag----atctt 166  Q
    ||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||  | ||||||    ||| |    
T  18847042 ccatcgtaccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacgattcccaacaatcgtgccacgattctgcagaaaaatc-t 18846944  T
Q  167 gattttaagttaactctcaca 187  Q
    |||||||||||||||||||||    
T  18846943 gattttaagttaactctcaca 18846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 11006663 - 11006781
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgc--agatcttg 167  Q
    |||||||||||||||||||| ||||||||||||  |||| |||||||||| |||||||||||||||||||| ||||||||||  | ||||  | | | ||    
T  11006663 ccatcgtgccacgatttttccagtgccttgcctaaaaaattgaaacctcc-atcgtgccacgttgcccagcgatcgtgccacgattctgcataaaacctg 11006761  T
Q  168 attttaagttaactctcaca 187  Q
    ||||||||||||||||||||    
T  11006762 attttaagttaactctcaca 11006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 22048493 - 22048575
Alignment:
Q  105 aaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 187  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||| |||| ||| |||||||||||||||||||||||||||    
T  22048493 aaaactgaaacctcca-tcgtgccacgttgcccttcaatcgtgccacgattcttgcggatcttgattttaagttaactctcaca 22048575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 16932243 - 16932360
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| ||||||||||||||||||||  |||||||||  | |||||| | | |||    
T  16932243 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctga 16932341  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  16932342 ttttaagttaactctcaca 16932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 9174568 - 9174684
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcctta-aaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgat 169  Q
    ||||||||||| |||||||| |||||||||||| | ||||| ||||||||| |||||| |||||||| |||  |||||||||  | ||||||| | ||||    
T  9174568 ccatcgtgccatgatttttccagtgccttgcctaataaactaaaacctcca-tcgtgctacgttgcctagccgtcgtgccacgattctgcagaacctgat 9174666  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  9174667 tttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 16934597 - 16934715
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| ||||||||| ||||||||||  |||||||||  | |||||| | | |||    
T  16934597 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccatgttgcccagccgtcgtgccacgattctgcagaaacctga 16934695  T
Q  169 ttttaagttaactctcacat 188  Q
    ||||||||||||||||||||    
T  16934696 ttttaagttaactctcacat 16934715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 22783200 - 22783318
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    ||||||||||| |||||||| ||||||||| ||  |||||| |||||||| |||||||||||||||||||| ||||| ||||  | |||||| | | |||    
T  22783200 ccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagctatcgtaccacgattctgcagaaacctga 22783298  T
Q  169 ttttaagttaactctcacat 188  Q
    ||||||||||||||||||||    
T  22783299 ttttaagttaactctcacat 22783318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 9176918 - 9177035
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||||||  |||||| |||||||| |||||||||||||||| | |  |||||||||  | |||||| | | |||    
T  9176918 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctcc-atcgtgccacgttgcctaaccgtcgtgccacgattctgcagaaacctga 9177016  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  9177017 ttttaagttaactctcaca 9177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 22780835 - 22780952
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    ||||||||||| |||||||| ||||||||| ||  |||||| |||||||| |||||||||||||||||||| ||||| ||||  | |||||| | | |||    
T  22780835 ccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagctatcgtaccacgattctgcagaaacctga 22780933  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  22780934 ttttaagttaactctcaca 22780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 51015157 - 51015042
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tga 168  Q
    |||||||||||| ||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||  || ||| ||||||  | |||||||  | |||    
T  51015157 ccatcgtgccacaatttttccagtgccttgcctaaaaaactgaaacctcc-atcgtgccacgttgccttgccatcatgccacgattctgcagaaatctga 51015059  T
Q  169 ttttaagttaactctca 185  Q
    |||||||||||||||||    
T  51015058 ttttaagttaactctca 51015042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 52942890 - 52943002
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||||||||||  | |  |||| ||||||| ||| |||||||||||||||||||||||||||||| | |||||||||| |||  |||| | | ||||    
T  52942890 ccatcgtgccacgaaatattcagtgacttgcctcaaagctgaaacctccaatcgtgccacgttgcccaaccatcgtgccacgatttttgcaaaacctgat 52942989  T
Q  170 tttaagttaactc 182  Q
    |||||||||||||    
T  52942990 tttaagttaactc 52943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 619895 - 619987
Alignment:
Q  97 cttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacat 188  Q
    ||||||| ||||||||||| |||||| ||||||||||| ||  ||||||||| || |||||| || | | |||||||||||||||||||||||    
T  619895 cttgcctcaaaactgaaacatccaattgtgccacgttgaccttcaatcgtgcgacaattcctacataacctgattttaagttaactctcacat 619987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 40091837 - 40091952
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||| || ||||||||||| | || ||| | | |||||||||| |||||||||||||||||| |||| | | |||||||| |||  |||||| | ||||    
T  40091837 ccatcatggcacgatttttccaatggcttacttcaaaactgaaatctccaatcgtgccacgttacccaaccaccgtgccacgattattgcagaacctgat 40091936  T
Q  170 tttaagttaactctca 185  Q
    ||||||||||||||||    
T  40091937 tttaagttaactctca 40091952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 37089796 - 37089910
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tga 168  Q
    |||||||||||||||||||| |||||||  |||  |||||| |||| ||  ||||||||||||||||  || ||||||||||  | |||||||  | |||    
T  37089796 ccatcgtgccacgatttttccagtgcctcacctaaaaaactaaaacatctcatcgtgccacgttgccttgccatcgtgccacgattctgcagaaatctga 37089895  T
Q  169 ttttaagttaactct 183  Q
    |||||||||||||||    
T  37089896 ttttaagttaactct 37089910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 24878900 - 24878836
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgc 135  Q
    ||||||||||||||    || |||| ||||| | |||||||||||||||||||||||||||||||    
T  24878900 ccatcgtgccacgaaaaatccagtgacttgcgtcaaaactgaaacctccaatcgtgccacgttgc 24878836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 11006585 - 11006615
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  11006585 aaaatctgtaacaaatctgcacccaaaaata 11006615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 11008936 - 11008966
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  11008936 aaaatctgtaacaaatctgcacccaaaaata 11008966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 24880341 - 24880299
Alignment:
Q  92 agtgccttgccttaaaactgaaacctccaatcgtgccacgttg 134  Q
    |||| ||||||| |||||||||||||||| |||||||||||||    
T  24880341 agtgacttgcctcaaaactgaaacctccattcgtgccacgttg 24880299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 11009014 - 11009051
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaa 108  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  11009014 ccatcgtgccacgatttttccagtgccttgcctaaaaa 11009051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 11163019 - 11162891
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcct 157  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  11163019 ccgccagcgcaccatcgtgccacaatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcccagcaatcgtgccacgattcct 11162921  T
Q  158 gcagatcttgattttaagttaactctcaca 187  Q
    ||||||||||||||||||||||||||||||    
T  11162920 gcagatcttgattttaagttaactctcaca 11162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 1321278 - 1321161
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||  ||||| |||||| |||  ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1321278 ccatcgtgccacgattttttcagtgctttgcctcaaacttgaaacctctaatcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgat 1321179  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  1321178 tttaagttaactctcaca 1321161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 11170273 - 11170145
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaa-ctgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcct 157  Q
    |||||||||||| |||| ||||||||||||| |||||||||||| |||| | |||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  11170273 ccgccagcgcacaatcgagccacgatttttccagtgccttgcctcaaaaaccgaaacctcca-tcgtgccacgttgcccagcaaccgtgccacgattcct 11170175  T
Q  158 gcagatcttgattttaagttaactctcaca 187  Q
    ||||||||||||||||||||||||||||||    
T  11170174 gcagatcttgattttaagttaactctcaca 11170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 5523035 - 5523152
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||| ||||||||||||||| ||| |||||||| |||||||||||| |||||||||||| |||||||||||||| |||||| |||||| |||||||||||    
T  5523035 ccattgtgccacgatttttccagtaccttgcctcaaaactgaaaccaccaatcgtgccatgttgcccagcaatcttgccacgattcctccagatcttgat 5523134  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  5523135 tttaagttaactctcaca 5523152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 26720385 - 26720268
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| ||||| |||||| |||  |||||||||||||| ||||||||||| |||| |||||||||| ||||||||||||| ||||    
T  26720385 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcctgccacgttgctcagccatcgtgccacgattcctgcagatcctgat 26720286  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  26720285 tttaagttaactctcaca 26720268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 5191490 - 5191374
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgat 169  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  | |||||||  | ||||    
T  5191490 ccatcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctgat 5191391  T
Q  170 tttaagttaactctcac 186  Q
    |||||||||||||||||    
T  5191390 tttaagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 10956447 - 10956563
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||| | || ||||| || ||||||| ||||||||||||| ||||    
T  10956447 ccatcgtgccacgatttttccagtgccttgccccaaaactgaaacctccaatcgtgccatgatgtccagccat-gtgccacgattcctgcagatcctgat 10956545  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  10956546 tttaagttaactctcaca 10956563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 18099590 - 18099707
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgat 169  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||  |  ||||| | | ||||    
T  18099590 ccatcgtgccacgatttttccagtgtcttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcagaaacctgat 18099689  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  18099690 tttaagttaactctcaca 18099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 18097305 - 18097422
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgat 169  Q
    ||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||  |  ||||| | | ||||    
T  18097305 ccatcgtgccacgatttttcctatgccttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcagaaacctgat 18097404  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  18097405 tttaagttaactctcaca 18097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 6719521 - 6719614
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaac--ctccaatcgtgccacgttgcccagcaatcgtgccac 151  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||  |||||||||||||||| |||||  ||||||||||||    
T  6719521 ccgccagcgcaccatcgtgccacgatttttccagtgcattgcctaaaaactgaaacctctccaatcgtgccacgatgcccttcaatcgtgccac 6719614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 50493793 - 50493674
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||||||||||||||| ||||||||||  | |||||| | | |||    
T  50493793 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctga 50493695  T
Q  169 ttttaagttaactctcacata 189  Q
    |||||||||||||||||||||    
T  50493694 ttttaagttaactctcacata 50493674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 35777289 - 35777163
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgca 160  Q
    ||||||||||||||||||||||||||||| ||||||||| ||  |||||| |||||||| ||||||||||||||||||||  |||||||||  | |||||    
T  35777289 gccagcgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagctgtcgtgccacgattctgca 35777191  T
Q  161 gatct-tgattttaagttaactctcaca 187  Q
    ||  | | ||||||||||||||||||||    
T  35777190 gaaatctaattttaagttaactctcaca 35777163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 53896637 - 53896759
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaa-ctgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||| |||||||  |||| || ||||||||| ||||||||||||||||||||||||||||||  | |||||| | | |||    
T  53896637 ccatcgtgccacgatttttccagtaccttgcccaaaaaactaaaacctcca-tcgtgccacgttgcccagcaatcgtgccacgattctgcagaaacctga 53896735  T
Q  169 ttttaagttaactctcacataaag 192  Q
    ||||||||||||||||||| ||||    
T  53896736 ttttaagttaactctcacacaaag 53896759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 48362060 - 48362186
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgca 160  Q
    |||||||||||||| ||||||||    || |||  ||||||| ||||||||||| |||||||||||||||||||||| | |||||||||| ||| || ||    
T  48362060 gccagcgcaccatcatgccacgaaaaatctagttacttgcctcaaaactgaaacttccaatcgtgccacgttgcccaaccatcgtgccacgatttctaca 48362159  T
Q  161 gatcttgattttaagttaactctcaca 187  Q
    || | ||||||||||||||||||||||    
T  48362160 gaacctgattttaagttaactctcaca 48362186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 24177116 - 24176999
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||||||||  |||||| |||| ||||| | | |||||||||  |||||||||||||||||||| |||| |||||||| ||| || |||| ||||||    
T  24177116 ccatcgtgccacattttttccagtgacttgcttcagaactgaaacaaccaatcgtgccacgttgccctgcaaacgtgccacgatttctccagaacttgat 24177017  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  24177016 tttaagttaactctcaca 24176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 38889886 - 38889755
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctg 158  Q
    ||||||||||||||||||||||||||||||| | ||||||||||  ||||||||||||||| ||||||||||||||||  || ||||| ||||  | |||    
T  38889886 ccgccagcgcaccatcgtgccacgatttttccaatgccttgcctaaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtaccacgattctg 38889788  T
Q  159 cag--atcttgattttaagttaactctcacata 189  Q
    |||  | | | ||||||||||||||||||||||    
T  38889787 cagaaaacctaattttaagttaactctcacata 38889755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 10192413 - 10192492
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac 151  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||  || ||||||||||    
T  10192413 ccatcgtgccacgatttttccagtgccttgcctcaaaactgaaacctcc-atcgtgccacgttgccttgcgatcgtgccac 10192492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 22114725 - 22114842
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||| ||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||| | ||||||||||  | || ||| | | |||    
T  22114725 ccatcgtgccacaatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcccaaccatcgtgccacgattctacagaaacctga 22114823  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  22114824 ttttaagttaactctcaca 22114842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 32218962 - 32218836
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgca 160  Q
    ||||||||||||||||||||||     || || | ||||||| |||  |||||||||||||||||||||||||||||   |||||||||| ||| |||||    
T  32218962 gccagcgcaccatcgtgccacggaaaatccagcgacttgcctcaaagttgaaacctccaatcgtgccacgttgcccaatcatcgtgccacgatttctgca 32218863  T
Q  161 gatcttgattttaagttaactctcaca 187  Q
    || | ||||||||||||||||||||||    
T  32218862 gaacctgattttaagttaactctcaca 32218836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 38210184 - 38210067
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| ||||||||||||||||||||  |||||||||  | |||||| | | |||    
T  38210184 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctga 38210086  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  38210085 ttttaagttaactctcaca 38210067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 10085493 - 10085557
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcc 136  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  10085493 ccatcgtgccacgatttttccagtgccttgcctcaaaactgaaacctcc-atcgtgccacgttgcc 10085557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 32264498 - 32264581
Alignment:
Q  105 aaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacat 188  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||| ||| ||||| | | |||||||||||||||||||||||    
T  32264498 aaaactgaaacctccaatcgtgccacgtt-cccagccatcgtgccacgatttctgcaaaacctgattttaagttaactctcacat 32264581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 6066139 - 6066254
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaatannnnnnnnnnnnatccgccagcgcaccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaa 113  Q
    |||||||||||||||||||| ||||||||||            |||||||||||||||||||||||||||| |||| ||||||||| ||  |||||| ||    
T  6066139 aaaatctgtaacaaatctgctcccaaaaatacattttatttttatccgccagcgcaccatcgtgccacgatgtttccagtgccttgcccaaaaaactaaa 6066238  T
Q  114 acctccaatcgtgccac 130  Q
    |||||| ||||||||||    
T  6066239 acctcc-atcgtgccac 6066254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 7606881 - 7606963
Alignment:
Q  105 aaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 187  Q
    |||||||||||||||| ||||||||||||||||||| |||||| |||  | |||||| | | ||||||||||||||||||||||    
T  7606881 aaaactgaaacctcca-tcgtgccacgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 7606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 5899576 - 5899497
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgcca 150  Q
    ||||||||||| |||||||| ||||||||||||  |||||| |||| ||| |||||||||||||||||  |||||||||||    
T  5899576 ccatcgtgccatgatttttccagtgccttgcctaaaaaactaaaacatcc-atcgtgccacgttgcccttcaatcgtgcca 5899497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 6063812 - 6063842
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  6063812 aaaatctgtaacaaatctgcacccaaaaata 6063842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 6063889 - 6064006
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgca-gatcttga 168  Q
    |||||||||||||||||||  ||||||||| ||  |||||| |||||||| || |||||||||||||  || ||||||||||  | |||||  | | |||    
T  6063889 ccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctcc-attgtgccacgttgccttgccatcgtgccacgattctgcataaacctga 6063987  T
Q  169 ttttaagttaactctcaca 187  Q
    ||||||||||| |||||||    
T  6063988 ttttaagttaattctcaca 6064006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 9666947 - 9666993
Alignment:
Q  105 aaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac 151  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||||||||    
T  9666947 aaaactgaacccttcaatcgtgccacgttgccctgcaaacgtgccac 9666993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 35777336 - 35777306
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  35777336 aaaatctgtaacaaatctgcacccaaaaata 35777306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 38889932 - 38889902
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||    
T  38889932 aaaatctgtaacaaatctgcacccaaaaata 38889902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 25388714 - 25388654
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacg 131  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||||||    
T  25388714 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacg 25388654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 2746 - 2629
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  2746 ccatcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacgttgcctagcaatcgtgtcacaattcctgcagatcttgat 2647  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  2646 tttaagttaactctcaca 2629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 38881962 - 38881845
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaa-ctgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttga 168  Q
    |||||||||||||||||||| |||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  38881962 ccatcgtgccacgatttttccagtgccttgcctcaaaaactaaaacctcca-tcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttga 38881864  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  38881863 ttttaagttaactctcaca 38881845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 34479797 - 34479972
Alignment:
Q  13 tcaaaatctgtaacaaatctgcacccaaaaatannnnnnnnnnnnatccgccagcgcaccatcgtgccacgatttttcaagtgccttgcct-taaaactg 111  Q
    |||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||     
T  34479797 tcaaaatctgtaacaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatttttccagtgccttgcctaaaaaacta 34479896  T
Q  112 aaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 187  Q
    |||||||| |||||||||||||||||||| ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  34479897 aaacctcc-atcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 34479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 659838 - 659713
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgca 160  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||| ||| |||||    
T  659838 gccagcgcaccatcgtgccacgatttttccagtgacttgcctcaaa-ctgaaacctccaatcgtgccacgttgcctagccatcgtgccacgatttctgca 659740  T
Q  161 gatcttgattttaagttaactctcaca 187  Q
    || | ||||||||||||||||||||||    
T  659739 gaacctgattttaagttaactctcaca 659713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 4236487 - 4236374
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgat 169  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||  | ||||    
T  4236487 ccattgtgccacgatttttccagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacaattctgcagaaatctgat 4236388  T
Q  170 tttaagttaactct 183  Q
    ||||||||||||||    
T  4236387 tttaagttaactct 4236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 31466370 - 31466496
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgca 160  Q
    ||||| |||||||||||||| |||||||| |||| ||||||| | ||||||||| ||  |||||||||||||||||  |||||||||||| |||||||||    
T  31466370 gccagtgcaccatcgtgccaagatttttccagtgacttgcctcataactgaaacatctcatcgtgccacgttgcccttcaatcgtgccacgattcctgca 31466469  T
Q  161 gatcttgattttaagttaactctcaca 187  Q
     | | ||||||||||||||||||||||    
T  31466470 aaacctgattttaagttaactctcaca 31466496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 34477515 - 34477632
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||||||  |||||| |||||||| |||||||||||||||||||| ||||||||||  | |||||| | |||||    
T  34477515 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctcc-atcgtgccacgttgcccagccatcgtgccacgattctgcagaaacttga 34477613  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  34477614 ttttaagttaactctcaca 34477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 16776014 - 16775897
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||  ||||| |||||| |||  ||||||||||||||||| |||||||||  || |||||||||| ||||||||||||| ||||    
T  16776014 ccatcgtgccacgattttttcagtgctttgcctcaaacttgaaacctccaatcgtgtcacgttgccttgccatcgtgccacgattcctgcagatcctgat 16775915  T
Q  170 tttaagttaactctcaca 187  Q
    |||||||||| |||||||    
T  16775914 tttaagttaattctcaca 16775897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 25921867 - 25921994
Alignment:
Q  64 cagcgcaccatcgtgccacgatttttcaagtgccttgcct--taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag 161  Q
    ||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||| |||||||||||||| ||| | ||||||||||  | ||||||    
T  25921867 cagcgcaccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgtccaaccatcgtgccacgattctgcag 25921965  T
Q  162 -atcttgattttaagttaactctcacata 189  Q
     | | ||||||||||||||||||||||||    
T  25921966 aaacctgattttaagttaactctcacata 25921994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 2174806 - 2174680
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgca 160  Q
    ||||| ||||||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||  || ||||||||||  | |||||    
T  2174806 gccagtgcaccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgattctgca 2174708  T
Q  161 g-atcttgattttaagttaactctcaca 187  Q
    | | | ||||||||||||||||||||||    
T  2174707 gaaacctgattttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 20504361 - 20504452
Alignment:
Q  97 cttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 187  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||||| | ||||||||||||||||||||||    
T  20504361 cttgcctcaaaactaaaacctccaatcgtgccacgttgcccagctatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 20504452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 18186491 - 18186588
Alignment:
Q  92 agtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcacat 188  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||  | |||||| | |||||||||||||||||||||||||    
T  18186491 agtgacttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacttgattttaagttaactctcacat 18186588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 39797975 - 39797849
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgca 160  Q
    |||||||||||||||||||| ||||||||  |||||||||||  ||||||||||||||| ||| |||||||||||||||| ||||||||||  |  ||||    
T  39797975 gccagcgcaccatcgtgccatgatttttccggtgccttgcctcaaaaactgaaacctcc-atcatgccacgttgcccagccatcgtgccacgattatgca 39797877  T
Q  161 g-atcttgattttaagttaactctcaca 187  Q
    | | | ||||||||||||||||||||||    
T  39797876 gaaacctgattttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 12556315 - 12556441
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgca 160  Q
    ||||||||| |||||||||||||    || |||| ||||||| |||||||||||||||||| ||||||||||||||||| ||  |||||| ||| |||||    
T  12556315 gccagcgcatcatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaattgtgccacgttgcccagccattatgccacgatttctgca 12556414  T
Q  161 gatcttgattttaagttaactctcaca 187  Q
    || | ||||||||| ||||||||||||    
T  12556415 gaacctgattttaaattaactctcaca 12556441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 21947866 - 21947770
Alignment:
Q  92 agtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 187  Q
    |||| ||| ||| |||||||||||||||||||||| ||||||||| ||| |||||||||| ||| ||||||| | ||||||||||||||||||||||    
T  21947866 agtgacttacctcaaaactgaaacctccaatcgtgtcacgttgcctagccatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 21947770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 20507910 - 20508001
Alignment:
Q  97 cttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 187  Q
    ||||||| |||||| |||||||||||||||| |||||||||| | |||||||||| ||| ||||||| | ||||||||||||||||||||||    
T  20507910 cttgcctcaaaactaaaacctccaatcgtgctacgttgcccaactatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 20508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 31544915 - 31544798
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||||||||||||||| ||||||||||  |  ||||| | | |||    
T  31544915 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgattttgcagaaacctga 31544817  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  31544816 ttttaagttaactctcaca 31544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 2818729 - 2818847
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||||||||||    || |||| ||||||| ||||||||||||||||||||||||| |||||| ||| |||||||||| ||| ||||||| | | ||    
T  2818729 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccatgttgcctagccatcgtgccacgatttctgcagaacctaat 2818828  T
Q  170 tttaag-ttaactctcaca 187  Q
    |||||| ||||||||||||    
T  2818829 tttaagtttaactctcaca 2818847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 31542559 - 31542442
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||||||||||||||| |||||| |||  |  ||||| | | |||    
T  31542559 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagctatcgtgtcacgattttgcagaaacctga 31542461  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  31542460 ttttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 659869 - 659929
Alignment:
Q  72 catcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgtt 133  Q
    ||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||    
T  659869 catcgtgccacgatttttccagtgacttgcctcaaa-ctgaaacctccaatcgtgccacgtt 659929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 36402719 - 36402806
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgcc 149  Q
    |||| ||||||||||||||||||     | |||| ||||||| ||||||||||||||||||||||| | |||||||||| ||||||||    
T  36402719 gccaacgcaccatcgtgccacgaaaaaaccagtgacttgcctcaaaactgaaacctccaatcgtgctatgttgcccagccatcgtgcc 36402806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 38960474 - 38960604
Alignment:
Q  58 atccgccagcgcaccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcc 156  Q
    |||||||| |||||||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| |   |||||||  |||||||||  |      
T  38960474 atccgccaacgcaccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcaaagcccagccgtcgtgccacgattg 38960572  T
Q  157 tgcag-atcttgattttaagttaactctcaca 187  Q
    ||||| | | ||||||||||||||||||||||    
T  38960573 tgcagaaacctgattttaagttaactctcaca 38960604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 10749622 - 10749505
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  10749622 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctga 10749524  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  10749523 ttttaagttaactctcaca 10749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 15354948 - 15355065
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  15354948 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctga 15355046  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  15355047 ttttaagttaactctcaca 15355065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 15357224 - 15357341
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  15357224 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctga 15357322  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  15357323 ttttaagttaactctcaca 15357341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 6756381 - 6756257
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgca 160  Q
    |||||||||||||||||||||||    || |||| ||||||| |||  ||||||||| |||||||||| |||  ||||  |||||||||| ||| ||| |    
T  6756381 gccagcgcaccatcgtgccacgaaaaatccagtgacttgcctcaaagttgaaacctctaatcgtgccatgttatccaggcatcgtgccacgatttctgta 6756282  T
Q  161 gatcttgattttaagttaactctca 185  Q
    || | ||||||||| ||||| ||||    
T  6756281 gaacctgattttaaattaaccctca 6756257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 21684905 - 21684969
Alignment:
Q  124 gtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 187  Q
    ||||||||||||||||| ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 21684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 34477436 - 34477468
Alignment:
Q  13 tcaaaatctgtaacaaatctgcacccaaaaata 45  Q
    |||||||||||||||||||||||||||||||||    
T  34477436 tcaaaatctgtaacaaatctgcacccaaaaata 34477468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 31542636 - 31542607
Alignment:
Q  16 aaatctgtaacaaatctgcacccaaaaata 45  Q
    ||||||||||||||||||||||||||||||    
T  31542636 aaatctgtaacaaatctgcacccaaaaata 31542607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 71 - 188
Target Start/End: Complemental strand, 15823403 - 15823285
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| ||||| |||||| |||  ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||    
T  15823403 ccatcgtgccacgatttttctagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgcagatcctgat 15823304  T
Q  170 tttaagttaactctcacat 188  Q
    |||||||||||||||||||    
T  15823303 tttaagttaactctcacat 15823285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 28840535 - 28840418
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||  || |||||||||| ||||||||||||| ||||    
T  28840535 ccatcgtgccacaatttttccagtaccttgcctaaaaactgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcagatcctgat 28840436  T
Q  170 tttaagttaactctcaca 187  Q
    |||||||||||| |||||    
T  28840435 tttaagttaactttcaca 28840418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 6822904 - 6822775
Alignment:
Q  60 ccgccagcgcaccatcgtgccacgatttttcaagtgccttgcct--taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcct 157  Q
    ||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||| |||||||||||||||||||| ||||||||||  | ||    
T  6822904 ccgccagcgcaccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccagccatcgtgccacgattct 6822806  T
Q  158 gcag-atcttgattttaagttaactctcaca 187  Q
    |||| | | ||||||||||||||||||||||    
T  6822805 gcagaaacctgattttaagttaactctcaca 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 28842350 - 28842233
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| |||  || |||||||||| |||||| |||||| ||||    
T  28842350 ccatcgtgccacgatttttccagtaccttgcctaaaaactgaaacctccaatcgtgccacgtagccttgccatcgtgccacgattcctacagatcctgat 28842251  T
Q  170 tttaagttaactctcaca 187  Q
    |||||||||||| |||||    
T  28842250 tttaagttaactttcaca 28842233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 10400252 - 10400369
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcag-atcttga 168  Q
    ||||||||||||||| |||| ||||| |||||| |||  |||||||||||||||||||||||||||||||||||||||||| ||||| |||| | | |||    
T  10400252 ccatcgtgccacgatatttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattcc-gcagaaacctga 10400350  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  10400351 ttttaagttaactctcaca 10400369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 13761694 - 13761577
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||| |||||||||||||||| ||||||||||  | |||||| | | |||    
T  13761694 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcatgccacgttgcccagccatcgtgccacgattctgcagaaacctga 13761596  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  13761595 ttttaagttaactctcaca 13761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 16231514 - 16231378
Alignment:
Q  15 aaaatctgtaacaaatctgcacccaaaaatannnnnnnnnnnnatccgccagcgcaccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaa 113  Q
    |||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||| |||| |||| ||  |||||| ||    
T  16231514 aaaatctgtaacaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaa 16231415  T
Q  114 acctccaatcgtgccacgttgcccagcaatcgtgccac 151  Q
    |||||| ||||||||||||||||||||  |||||||||    
T  16231414 acctcc-atcgtgccacgttgcccagccgtcgtgccac 16231378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 49687425 - 49687301
Alignment:
Q  64 cagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcaga 162  Q
    |||||||||||||||||||||    || |||| ||||||| |||||||||||||||||| ||||||||||||||||| ||| |||||| ||| || || |    
T  49687425 cagcgcaccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaattgtgccacgttgcccagccatcatgccacgatttctacata 49687326  T
Q  163 tcttgattttaagttaactctcaca 187  Q
     | ||||||||||||||||||||||    
T  49687325 acctgattttaagttaactctcaca 49687301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 51749896 - 51749778
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct--taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttg 167  Q
    |||||||||||||||||||| ||||||||||||   ||||||||||||||| ||||| |||||||||||| | ||||||||||  | |||||| | ||||    
T  51749896 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtaccacgttgcccaaccatcgtgccacgattctgcagaaacttg 51749798  T
Q  168 attttaagttaactctcaca 187  Q
    ||||||||||||||||||||    
T  51749797 attttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 51752222 - 51752104
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct--taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttg 167  Q
    |||||||||||||||||||| ||||||||||||   ||||||||||||||| |||||||||||||||||| | ||||||||||  | |||||| | | ||    
T  51752222 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccaaccatcgtgccacgattctgcagaaacctg 51752124  T
Q  168 attttaagttaactctcaca 187  Q
    ||||||||||||||||||||    
T  51752123 attttaagttaactctcaca 51752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 3580050 - 3580159
Alignment:
Q  79 ccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagtt 177  Q
    |||||||||||| | || ||||||| | ||||||||| |||||| ||| |||||||||| ||||||||||||| ||||||||| | | ||||||||||||    
T  3580050 ccacgatttttccaatgacttgcctcataactgaaacatccaattgtgtcacgttgccctgcaatcgtgccacgattcctgcataacctgattttaagtt 3580149  T
Q  178 aactctcaca 187  Q
    ||||| ||||    
T  3580150 aactcccaca 3580159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 38925915 - 38925996
Alignment:
Q  105 aaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctca 185  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||| || | ||||||||||||||||||||    
T  38925915 aaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatttctgcggaacctgattttaagttaactctca 38925996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 47177194 - 47177078
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgat 169  Q
    |||||||||||||||||||| |||| ||||||  |||||| |||||||| |||||||||||||||||||   |||||||||  | |||||| | | ||||    
T  47177194 ccatcgtgccacgatttttccagtgtcttgcccaaaaactaaaacctcc-atcgtgccacgttgcccagtcgtcgtgccacgattctgcagaaacctgat 47177096  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  47177095 tttaagttaactctcaca 47177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 39462349 - 39462257
Alignment:
Q  97 cttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacat 188  Q
    ||||||| |||||||||||||| ||||||||||||||||||| | || ||| ||| ||| ||||||| | |||||||||||||||||||||||    
T  39462349 cttgcctcaaaactgaaacctctaatcgtgccacgttgcccaaccattgtgtcacgatttctgcagaacctgattttaagttaactctcacat 39462257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 47179545 - 47179428
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||  ||||||||| ||  |||||| |||||||| ||||||||||||||||||||  |||||||||  | |||||| | | |||    
T  47179545 ccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctga 47179447  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  47179446 ttttaagttaactctcaca 47179428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 47451495 - 47451405
Alignment:
Q  98 ttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 187  Q
    |||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||| |   |||||| |||||||||||||||    
T  47451495 ttgcctcaaaactgaaacctccaatcgtgccacattgcccagccatcgtgccacgatttctgcaaaatctgatttgaagttaactctcaca 47451405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 13214917 - 13214858
Alignment:
Q  92 agtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac 151  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||    
T  13214917 agtgacttgcctcaaaactgaaacctccaatcgtgccacgttgcccaaccatcgtgccac 13214858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 6823741 - 6823661
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct--taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgcca 150  Q
    ||||| |||||||||||||| ||||||||||||   ||||||||||||||| |||||||||||||||||| | |||||||||    
T  6823741 ccatcatgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccaaccatcgtgcca 6823661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 16226004 - 16225891
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||||||||||||| |  |||||||||  | |||||| | | |||    
T  16226004 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgcccaaccgtcgtgccacgattctgcagaaacctga 16225906  T
Q  169 ttttaagttaactct 183  Q
    |||||||||||||||    
T  16225905 ttttaagttaactct 16225891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 20302316 - 20302198
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct--taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tg 167  Q
    |||||||||||| ||||||| ||||||||||||   ||||||||||||||| ||||||||||||||||  || ||| |||| |  | |||||||  | ||    
T  20302316 ccatcgtgccacaatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgccttgccatcatgccgcgattctgcagaaatctg 20302218  T
Q  168 attttaagttaactctcaca 187  Q
    ||||||||||||||||||||    
T  20302217 attttaagttaactctcaca 20302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 30790818 - 30790935
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||||||||| |||||| |||| ||||| | | ||||||||| |||||||||||||| |||| | |||| |||| ||| ||| || |||| | || |    
T  30790818 ccatcgtgccacgttttttccagtgacttgcttcataactgaaacatccaatcgtgccacattgctctgcaaacgtgtcacgatttctccagaacctggt 30790917  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||| ||||||||    
T  30790918 tttaagttagctctcaca 30790935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 20291386 - 20291277
Alignment:
Q  83 gatttttcaagtgccttgccttaaaa--ctgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgattttaagttaa 179  Q
    |||||||| |||||| ||||| ||||  ||||||||||||  ||||||||||||||  || ||||||||||  | |||||||  | ||||||||||||||    
T  20291386 gatttttccagtgccatgcctcaaaaaactgaaacctccac-cgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaa 20291288  T
Q  180 ctctcacataa 190  Q
    |||||||||||    
T  20291287 ctctcacataa 20291277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 23783355 - 23783238
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  23783355 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctga 23783257  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  23783256 ttttaagttaactctcaca 23783238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 14098363 - 14098452
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac 151  Q
    |||||||||||||||||| ||||    || |||| ||||| | ||| ||||||||||||||||||||||| ||| || | ||||||||||    
T  14098363 gccagcgcaccatcgtgcaacgaaaaatccagtgacttgcgtcaaagctgaaacctccaatcgtgccacggtgctcaaccatcgtgccac 14098452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 13461357 - 13461393
Alignment:
Q  152 attcctgcagatcttgattttaagttaactctcacat 188  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13461357 attcctgcagatcctgattttaagttaactctcacat 13461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 14098443 - 14098510
Alignment:
Q  121 atcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 187  Q
    ||||||||||| ||| |||| |||||||||| ||| |||||||   ||||||||||||||||||||||    
T  14098443 atcgtgccacggtgctcagccatcgtgccacgatttctgcagaatctgattttaagttaactctcaca 14098510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 41646728 - 41646680
Alignment:
Q  141 aatcgtgccac-attcctgcagatcttgattttaagttaactctcacat 188  Q
    ||||||||||| ||| ||||||| | |||||||||||||||||||||||    
T  41646728 aatcgtgccacgatttctgcagaacatgattttaagttaactctcacat 41646680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 42064348 - 42064231
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| ||||| |||||| |||  ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  42064348 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccagtcgtaccacgttgcccagcaatcgtgccacgattcctgcagatcttgat 42064249  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  42064248 tttaagttaactctcaca 42064231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 21521117 - 21521234
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||| ||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| | ||||    
T  21521117 ccatcgtggcacgatttttccagtggcttgcttcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgtagaacctgat 21521216  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  21521217 tttaagttaactctcaca 21521234  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 43623959 - 43624085
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag 161  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||   | ||||||    
T  43623959 gccagcgcaccatcgtgccacgattttttcagtgccttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtgccatgattctgcag 43624058  T
Q  162 -atcttgattttaagttaactctcaca 187  Q
     | | |||||||||||||||| |||||    
T  43624059 aaacctgattttaagttaactttcaca 43624085  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 6264543 - 6264658
Alignment:
Q  68 gcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatctt 166  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||| |||||||||||||| | ||||||| || ||| ||||||| | |    
T  6264543 gcaccatcgtgccacgatttttccagtgacttgcctcaaaactgaaacatccaatcatgccacgttgcccaaccatcgtgcaacaatttctgcagaacct 6264642  T
Q  167 gattttaagttaactc 182  Q
    ||||||||||||||||    
T  6264643 gattttaagttaactc 6264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 6259237 - 6259351
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||||||||||| |||| ||| ||| ||||||||||| |||||| |||||||||||| |||| |||||||||| ||| ||||||| | ||||    
T  6259237 ccatcgtgccacgatttttccagtgactttcctcaaaactgaaacatccaatagtgccacgttgcacagccatcgtgccacgatttctgcagaacctgat 6259336  T
Q  170 tttaagttaactctc 184  Q
    |||||||||||||||    
T  6259337 tttaagttaactctc 6259351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 40032469 - 40032586
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    ||||||||||||||    || |||| |||| || |||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| | ||||    
T  40032469 ccatcgtgccacgaaaaatccagtgacttgtctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatttctgcagaacctgat 40032568  T
Q  170 tttaagttaactctcaca 187  Q
    ||||||||||||||||||    
T  40032569 tttaagttaactctcaca 40032586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 18800696 - 18800819
Alignment:
Q  65 agcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagat 163  Q
    |||||||||||||||||| ||||||| |||| ||||| | | ||||||||| |||||||||| ||||||||||| ||| |||||||| ||| || ||||     
T  18800696 agcgcaccatcgtgccacaatttttccagtgacttgcttcataactgaaacatccaatcgtgtcacgttgcccaacaaacgtgccacgatttctccagaa 18800795  T
Q  164 cttgattttaagttaactctcaca 187  Q
    | ||||||||||||||||||||||    
T  18800796 catgattttaagttaactctcaca 18800819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 24162634 - 24162752
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct--taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttg 167  Q
    |||||||||||||||||||| ||||||||||||   ||||||||||||||| |||||||||||||||||| | || |||||||  | |||||| | ||||    
T  24162634 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcc-atcgtgccacgttgcccaaccattgtgccacgattctgcagaaacttg 24162732  T
Q  168 attttaagttaactctcaca 187  Q
    ||||||||||||||||||||    
T  24162733 attttaagttaactctcaca 24162752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 27104632 - 27104519
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tga 168  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||  ||||||||||||  | |||||||  | |||    
T  27104632 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcccttcaatcgtgccacgattctgcagaaatctga 27104534  T
Q  169 ttttaagttaactct 183  Q
    |||||||||||||||    
T  27104533 ttttaagttaactct 27104519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 19502433 - 19502550
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||  || ||||||||||  | |||||| | | |||    
T  19502433 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctga 19502531  T
Q  169 ttttaagttaactctcaca 187  Q
    ||||||||||||| |||||    
T  19502532 ttttaagttaactatcaca 19502550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 22407831 - 22407948
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 169  Q
    |||||||||||| ||||||  | || ||||||| ||||||||||| ||||||||||||| ||| |||  |||||||||||| ||||||||||| | | ||    
T  22407831 ccatcgtgccacaattttttcactgacttgcctcaaaactgaaacatccaatcgtgccatgttacccttcaatcgtgccacgattcctgcagaacctaat 22407930  T
Q  170 tttaagttaactctcaca 187  Q
    ||||| ||||||||||||    
T  22407931 tttaaattaactctcaca 22407948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 19504767 - 19504846
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgcca 150  Q
    |||||||||||||||||||| ||||||||||||  |||| | |||||||| ||||||||||||||||  || |||||||||    
T  19504767 ccatcgtgccacgatttttccagtgccttgcctaaaaaattaaaacctcc-atcgtgccacgttgccttgccatcgtgcca 19504846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 36559241 - 36559358
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  36559241 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctga 36559339  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  36559340 ttttaagttaactctcaca 36559358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 45332558 - 45332675
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaa-ctgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagat-cttga 168  Q
    ||||||| |||||||||||| ||| |||||||  |||| || ||||||||| ||||||| ||  |||||||  |||||||||  | |||||||  | |||    
T  45332558 ccatcgttccacgatttttccagttccttgcccaaaaaactaaaacctcca-tcgtgccgcgaagcccagccgtcgtgccacgattctgcagaaacctga 45332656  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  45332657 ttttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 73418 - 73540
Alignment:
Q  62 gccagcgcaccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag 161  Q
    |||||| |||||||||||||| ||||||| ||||| |||||| |||  ||||||||||||||||||||||||||| ||| ||||||||||  | |||||     
T  73418 gccagcacaccatcgtgccacaatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgcat 73517  T
Q  162 atct-tgattttaagttaactct 183  Q
    |  | ||||||||||||||||||    
T  73518 aaatctgattttaagttaactct 73540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 69716 - 69829
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgat 169  Q
    |||| |||| |||||||||| ||||| |||||| |||  ||||||||||||||||||||||||||| ||| ||||||||||  | |||||||  | ||||    
T  69716 ccattgtgctacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgcagaaatctgat 69815  T
Q  170 tttaagttaactct 183  Q
    ||||||||||||||    
T  69816 tttaagttaactct 69829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 14885 - 14768
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcag-atcttga 168  Q
    ||||||||||||||  |||| |||| ||||||| | ||||||||| ||| ||||| |||||||||||  |||||||||||| |||||||||| ||| |||    
T  14885 ccatcgtgccacgaaatttccagtgacttgcctcataactgaaacttcccatcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctga 14786  T
Q  169 ttttaagttaactctcac 186  Q
    ||||||||||||||||||    
T  14785 ttttaagttaactctcac 14768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 12937 - 13054
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| ||||||||||||||||  |  ||||||||||  | |||||| | | |||    
T  12937 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccacgttgccttgacatcgtgccacgattctgcagaaacctga 13035  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  13036 ttttaagttaactctcaca 13054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 6044 - 5927
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    ||||| |||||||||||||| ||||||||||||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  6044 ccatcatgccacgatttttccagtgccttgcctaaaaaactaaaacctcc-atcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctga 5946  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  5945 ttttaagttaactctcaca 5927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 22032 - 21915
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  22032 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctga 21934  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  21933 ttttaagttaactctcaca 21915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 24307 - 24190
Alignment:
Q  71 ccatcgtgccacgatttttcaagtgccttg-ccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttga 168  Q
    |||||||||||||||||||| ||||||||| ||  |||||| |||||||| |||||||| ||  |||||||  |||||||||  |  ||||| | | |||    
T  24307 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctcc-atcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctga 24209  T
Q  169 ttttaagttaactctcaca 187  Q
    |||||||||||||||||||    
T  24208 ttttaagttaactctcaca 24190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 29005 - 28941
Alignment:
Q  124 gtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 187  Q
    ||||||||||||||||| ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  29005 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 28941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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