View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_80 (Length: 249)
Name: NF1783_low_80
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 40258993 - 40258746
Alignment:
| Q |
1 |
tattctttcttcattttattaaccaaaacgcgtacttgatgccatctcataatttcctgcacctagttcctacaaatatatgtatgtataagaatacttt |
100 |
Q |
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| T |
40258993 |
tattctttcttcattttattaaccaaaacgcgtacttgatgccatctcataatttcctgcacctagttcctaaaaatatatgtat----aagaatacttt |
40258898 |
T |
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| Q |
101 |
ttcattaacaactttgacattagtcattactaagtaaaatcaatcacattgatagttggcattctgagatccatcctt----------------tgtgcc |
184 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40258897 |
ttctttaacaactttgacattagtcattactaagtaaaatcaatcacattgatagttggcattctgagatccatcctttgtggtttcactggtttgtgcc |
40258798 |
T |
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| Q |
185 |
tcttcagcatcttggagtgagttaaattttcattcacttatctatgcatttc |
236 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
40258797 |
tcttcagcatcttggagtgagttaaaatttcatttacttatctatgcatttc |
40258746 |
T |
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