View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_81 (Length: 248)
Name: NF1783_low_81
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_81 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 2221184 - 2221431
Alignment:
| Q |
1 |
caatggccatccgaggtgaagtggtggagaagaacagacaacaataatcatcaacaagaagaacaagggacaagagcaatacaacggaggcatcatggag |
100 |
Q |
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| T |
2221184 |
caatggccatccgaggtgaagtggtggagaagaacagacaacaataatcatcaacaagaagaacaagggacaagagcaatacaacggaggcatcatggag |
2221283 |
T |
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| Q |
101 |
gagttttggatctgatggtatgggagcgattggttgtaatctcaaaggaactattctaaaattttgtttgcagcatagaaaaaccaataagaaaattcag |
200 |
Q |
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| T |
2221284 |
gagttttggatctgatggtatgggagcgattggttgtaatctcgaaggaactattctacaattttgtttgcagcatagaaaaaccaataagaaagttcag |
2221383 |
T |
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| Q |
201 |
ggtgtttaaagttgtctatatgttctgattctgttgagaaggcttttg |
248 |
Q |
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| T |
2221384 |
ggtgtttaaagttgtctatatgttctgattctgttgagaaggcttttg |
2221431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 38284449 - 38284576
Alignment:
| Q |
65 |
aagggacaagagcaatacaacggaggcatcatggaggagttttggatctgatggtatgggagcgattggttgtaatctcaaaggaactattctaaaattt |
164 |
Q |
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| T |
38284449 |
aagggaaaagatcaacgcaatggaggcatcatggatgagctttggatttgatggtatgggagtggttggttgtaatctcgaaggaactagcctactatat |
38284548 |
T |
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| Q |
165 |
tgtttgcagcatagaaaaaccaataaga |
192 |
Q |
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| T |
38284549 |
tgtttgcagcatagaaaaaccaacaaga |
38284576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 38284605 - 38284668
Alignment:
| Q |
187 |
ataagaaaattcagggtgt--ttaaagttgtctatatgttctgattctgttgagaaggcttttg |
248 |
Q |
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| T |
38284605 |
ataaggaaattcagggagtatttaaagttgttgatttgttttgattctgttgagaaggcttttg |
38284668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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