View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_83 (Length: 246)

Name: NF1783_low_83
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_83
NF1783_low_83
[»] scaffold0043 (1 HSPs)
scaffold0043 (92-147)||(86935-86990)
[»] chr2 (5 HSPs)
chr2 (18-93)||(45305866-45305941)
chr2 (99-147)||(43900495-43900543)
chr2 (98-147)||(28527284-28527333)
chr2 (93-128)||(41212424-41212459)
chr2 (93-147)||(1400730-1400784)
[»] chr4 (10 HSPs)
chr4 (93-147)||(24669272-24669326)
chr4 (93-140)||(17633442-17633489)
chr4 (93-147)||(35544513-35544567)
chr4 (99-147)||(9809041-9809089)
chr4 (93-128)||(1966790-1966825)
chr4 (18-93)||(9810659-9810734)
chr4 (93-128)||(9810881-9810916)
chr4 (93-128)||(17633298-17633333)
chr4 (18-93)||(17633476-17633551)
chr4 (99-127)||(55666938-55666966)
[»] chr3 (20 HSPs)
chr3 (92-147)||(27365118-27365174)
chr3 (13-93)||(27040722-27040802)
chr3 (92-139)||(27326173-27326220)
chr3 (92-139)||(27332410-27332457)
chr3 (93-147)||(3823612-3823666)
chr3 (93-137)||(5341985-5342029)
chr3 (93-145)||(19280298-19280350)
chr3 (92-140)||(27707634-27707682)
chr3 (100-147)||(31545715-31545762)
chr3 (98-147)||(27335512-27335562)
chr3 (98-127)||(11501274-11501303)
chr3 (24-93)||(11501410-11501479)
chr3 (95-128)||(22432448-22432481)
chr3 (93-134)||(27079402-27079443)
chr3 (93-134)||(27085199-27085240)
chr3 (98-147)||(27364961-27365010)
chr3 (92-147)||(18733438-18733494)
chr3 (93-129)||(19280159-19280195)
chr3 (103-147)||(27335360-27335404)
chr3 (98-126)||(34164325-34164353)
[»] scaffold0251 (1 HSPs)
scaffold0251 (18-93)||(10750-10825)
[»] chr6 (12 HSPs)
chr6 (18-93)||(13767102-13767177)
chr6 (99-147)||(23595121-23595169)
chr6 (93-147)||(2430651-2430705)
chr6 (93-127)||(3222551-3222585)
chr6 (93-147)||(9068504-9068558)
chr6 (98-147)||(15341859-15341908)
chr6 (99-139)||(10304802-10304842)
chr6 (99-147)||(33815110-33815158)
chr6 (92-127)||(11108125-11108160)
chr6 (98-147)||(3222397-3222446)
chr6 (92-140)||(11108177-11108225)
chr6 (92-128)||(23595259-23595295)
[»] chr1 (12 HSPs)
chr1 (98-146)||(38244801-38244849)
chr1 (92-138)||(2995962-2996007)
chr1 (98-140)||(5855072-5855114)
chr1 (99-147)||(9929871-9929919)
chr1 (98-150)||(17227499-17227551)
chr1 (99-145)||(34490289-34490335)
chr1 (93-139)||(42604325-42604371)
chr1 (92-145)||(5831633-5831686)
chr1 (99-128)||(24708074-24708103)
chr1 (45-93)||(5831672-5831720)
chr1 (93-145)||(25238577-25238629)
chr1 (99-147)||(34490156-34490203)
[»] chr7 (15 HSPs)
chr7 (93-128)||(22740117-22740152)
chr7 (93-147)||(15958269-15958323)
chr7 (93-147)||(20556727-20556781)
chr7 (93-128)||(5083749-5083784)
chr7 (96-147)||(5083885-5083936)
chr7 (18-93)||(18312726-18312801)
chr7 (92-147)||(18312787-18312842)
chr7 (93-152)||(22033154-22033213)
chr7 (92-147)||(27523441-27523496)
chr7 (98-128)||(21589741-21589771)
chr7 (93-139)||(28805125-28805171)
chr7 (24-93)||(28804887-28804956)
chr7 (99-127)||(15958428-15958456)
chr7 (99-147)||(20556868-20556916)
chr7 (95-139)||(21589586-21589630)
[»] scaffold0126 (1 HSPs)
scaffold0126 (100-146)||(21575-21621)
[»] chr8 (11 HSPs)
chr8 (93-147)||(31596756-31596810)
chr8 (98-147)||(40502388-40502437)
chr8 (45-93)||(5322097-5322145)
chr8 (99-147)||(15714789-15714837)
chr8 (18-93)||(31596694-31596769)
chr8 (93-147)||(6809895-6809949)
chr8 (98-128)||(40502195-40502225)
chr8 (92-129)||(5322074-5322111)
chr8 (92-129)||(33286177-33286214)
chr8 (92-140)||(31273663-31273711)
chr8 (13-93)||(31273697-31273777)
[»] scaffold0213 (1 HSPs)
scaffold0213 (98-147)||(24932-24981)
[»] chr5 (9 HSPs)
chr5 (99-147)||(15221663-15221711)
chr5 (17-93)||(35922606-35922682)
chr5 (13-93)||(43461835-43461915)
chr5 (93-128)||(35922669-35922704)
chr5 (96-147)||(36169427-36169478)
chr5 (101-147)||(7156180-7156226)
chr5 (93-147)||(43262794-43262848)
chr5 (93-147)||(43461795-43461848)
chr5 (92-129)||(38522079-38522116)
[»] scaffold1126 (1 HSPs)
scaffold1126 (93-147)||(303-357)


Alignment Details
Target: scaffold0043 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 86935 - 86990
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  86935 attaatcaaatatatagtttgtgtgaccacattttttcggttgtgtgaccactatt 86990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 45305866 - 45305941
Alignment:
Q  18 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    ||||||||||| || |||| |||| |||||||||||||||||| ||||||| |||||| || ||||||||||||||    
T  45305866 aataaagatagatttacacccttaatatgtacactcctttgtaccactctaaaaaatttcagttaatcaaatatat 45305941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 43900495 - 43900543
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  43900495 aaatatatggtctgtgtgatcacattttttcagttgtgtgaccactatt 43900543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 28527284 - 28527333
Alignment:
Q  98 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||||||||||||||||||||  |||| ||||| ||||||    
T  28527284 caaatatatggtctgtgtgaccacatttttttagttgcgtgaccactatt 28527333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 41212459 - 41212424
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacatttttt 128  Q
    |||| |||||||||||||||||||||||||||||||    
T  41212459 ttaaccaaatatatggtctgtgtgaccacatttttt 41212424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 1400730 - 1400784
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||| |||||||||||| ||||||||||||||||||  |||| ||||| ||||||    
T  1400730 ttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgaccactatt 1400784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 24669326 - 24669272
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  24669326 ttaatcaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactatt 24669272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 17633489 - 17633442
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgac 140  Q
    |||| |||||||||||||||||||||||||||||||| |||| |||||    
T  17633489 ttaaccaaatatatggtctgtgtgaccacattttttcagttgcgtgac 17633442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 35544567 - 35544513
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||| |||| ||||||    
T  35544567 ttaatcaaatatatggtatgtgtgatcacattttttccgttgtatgaccactatt 35544513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 9809041 - 9809089
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||| |||||||||||||||| |||| ||||| ||||||    
T  9809041 aaatatatggtctgcgtgaccacattttttcagttgcgtgaccactatt 9809089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 1966790 - 1966825
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacatttttt 128  Q
    |||| |||||||||||||||||||||||||||||||    
T  1966790 ttaaccaaatatatggtctgtgtgaccacatttttt 1966825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 9810659 - 9810734
Alignment:
Q  18 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    ||||||||||||||||||| |||| ||||||||| | |||||| |||| |  |||||| || ||||| ||||||||    
T  9810659 aataaagataggttgacacccttaatatgtacacccttttgtaccactatgaaaaatttcagttaattaaatatat 9810734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 9810916 - 9810881
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacatttttt 128  Q
    |||| |||||||||||||||||||||||||||||||    
T  9810916 ttaaccaaatatatggtctgtgtgaccacatttttt 9810881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 17633298 - 17633333
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacatttttt 128  Q
    |||| |||||||||||||||||||||||||||||||    
T  17633298 ttaaccaaatatatggtctgtgtgaccacatttttt 17633333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 17633551 - 17633476
Alignment:
Q  18 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    |||||||||||||||| || |||| ||||||||| |||||||| |||| |  |||||| || |||| |||||||||    
T  17633551 aataaagataggttgatacccttaatatgtacacccctttgtaccactttgaaaaatttcagttaaccaaatatat 17633476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 55666966 - 55666938
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttt 127  Q
    |||||||||||||||||||||||||||||    
T  55666966 aaatatatggtctgtgtgaccacattttt 55666938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 27365174 - 27365118
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacatt-ttttcggttgtgtgacaactatt 147  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  27365174 attaatcaaatatatggtttgtgtgaccacatttttttcggttgtgtgaccactatt 27365118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 27040802 - 27040722
Alignment:
Q  13 aatataataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    |||| |||||||||||||||||||||| | | |||||| |||||||||  ||||||||||||| |  |||| |||||||||    
T  27040802 aatagaataaagataggttgacactctcaatgtgtacattcctttgtactactctagaaaatttcggttaaccaaatatat 27040722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 27326220 - 27326173
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtga 139  Q
    |||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  27326220 attaatcaaatatatggtttgtctgaccacattttttcggttgcgtga 27326173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 27332457 - 27332410
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtga 139  Q
    |||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  27332457 attaatcaaatatatggtttgtctgaccacattttttcggttgcgtga 27332410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 3823612 - 3823666
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||| ||| |||||||||||||||||||||||||||| |||| ||||| ||||||    
T  3823612 ttaaccaattatatggtctgtgtgaccacattttttctgttgcgtgaccactatt 3823666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 5342029 - 5341985
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgt 137  Q
    |||||| |||||||||||||||||||||||||||||  |||||||    
T  5342029 ttaatcgaatatatggtctgtgtgaccacatttttttagttgtgt 5341985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 19280350 - 19280298
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaacta 145  Q
    |||||||||||||||||||||||||| |||||||||  || ||||||| ||||    
T  19280350 ttaatcaaatatatggtctgtgtgacaacattttttaagtggtgtgaccacta 19280298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 27707634 - 27707682
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgac 140  Q
    |||||||||||||||||| |||||| ||||||||||||  |||||||||    
T  27707634 attaatcaaatatatggtttgtgtgcccacattttttcaattgtgtgac 27707682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 31545762 - 31545715
Alignment:
Q  100 aatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||| ||||||||||||||||  |||||||||| ||||||    
T  31545762 aatatatggtctatgtgaccacatttttttagttgtgtgaccactatt 31545715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 27335562 - 27335512
Alignment:
Q  98 caaatatatggtctgtgtgaccacatt-ttttcggttgtgtgacaactatt 147  Q
    |||||||||||| |||||||||||||| |||||||||| ||||| ||||||    
T  27335562 caaatatatggtttgtgtgaccacatttttttcggttgcgtgactactatt 27335512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 11501274 - 11501303
Alignment:
Q  98 caaatatatggtctgtgtgaccacattttt 127  Q
    ||||||||||||||||||||||||||||||    
T  11501274 caaatatatggtctgtgtgaccacattttt 11501303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 11501479 - 11501410
Alignment:
Q  24 gataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    ||||||||||||| |||| | ||||||||||||| || |||| |||||||||  | |||| |||||||||    
T  11501479 gataggttgacacacttaatgtgtacactcctttataccactttagaaaatttaagttaaccaaatatat 11501410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 22432481 - 22432448
Alignment:
Q  95 aatcaaatatatggtctgtgtgaccacatttttt 128  Q
    |||||||||||||||||||||||| |||||||||    
T  22432481 aatcaaatatatggtctgtgtgactacatttttt 22432448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 27079443 - 27079402
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttg 134  Q
    |||| ||||||||||||||||||||||||| |||||| ||||    
T  27079443 ttaaccaaatatatggtctgtgtgaccacaatttttcagttg 27079402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 27085240 - 27085199
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttg 134  Q
    |||| ||||||||||||||||||||||||| |||||| ||||    
T  27085240 ttaaccaaatatatggtctgtgtgaccacaatttttcagttg 27085199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 27364961 - 27365010
Alignment:
Q  98 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||| || ||||||||||| |||  |||||||||||||||||    
T  27364961 caaatatatggtatgcgtgaccacattattttagttgtgtgacaactatt 27365010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 18733438 - 18733494
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacatttt-ttcggttgtgtgacaactatt 147  Q
    ||||| |||||||||||| ||||| |||||||||| |||||||| ||||| ||||||    
T  18733438 attaaccaaatatatggtttgtgttaccacattttattcggttgcgtgactactatt 18733494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 19280159 - 19280195
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttc 129  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  19280159 ttaaccaaatatatggtctgagtgaccacattttttc 19280195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 27335360 - 27335404
Alignment:
Q  103 atatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||    
T  27335360 atatggtatgtgtgaccacatttttttagttgcgtgacaactatt 27335404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 34164325 - 34164353
Alignment:
Q  98 caaatatatggtctgtgtgaccacatttt 126  Q
    |||||||||||||||||||||||||||||    
T  34164325 caaatatatggtctgtgtgaccacatttt 34164353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 10825 - 10750
Alignment:
Q  18 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    |||||||||||||  |||  |||| |||||||| ||||||||| |||||||||||||| ||||||| |||||||||    
T  10825 aataaagataggtaaacatccttaatatgtacattcctttgtaccactctagaaaatttcaattaaccaaatatat 10750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 13767102 - 13767177
Alignment:
Q  18 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    ||||| |||| ||||||||||| | | |||||||||||||||||||||||||||||||  | |||| |||||||||    
T  13767102 aataatgataagttgacactctaaatgtgtacactcctttgtatcactctagaaaatttaagttaaccaaatatat 13767177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 23595121 - 23595169
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||    
T  23595121 aaatatatggtctgtgtgaccatatttttttagttgtgtgacaactatt 23595169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 2430705 - 2430651
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||| |||||||||||| ||||||||||||||||||| |||| ||||| ||||||    
T  2430705 ttaaccaaatatatggtttgtgtgaccacattttttcagttgcgtgaccactatt 2430651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 3222585 - 3222551
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttt 127  Q
    |||||||||||||||||||||||||||||||||||    
T  3222585 ttaatcaaatatatggtctgtgtgaccacattttt 3222551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 9068558 - 9068504
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||| ||||||    
T  9068558 ttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactatt 9068504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 15341908 - 15341859
Alignment:
Q  98 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||||||||||||||||||||  | |||||||| ||||||    
T  15341908 caaatatatggtctgtgtgaccacattttttaaggtgtgtgaccactatt 15341859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 10304842 - 10304802
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtga 139  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  10304842 aaatatatggtctgtgtgaccacattttttcagttgcgtga 10304802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 33815158 - 33815110
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||| |||||||||||||||||||||| |||| ||||| ||||||    
T  33815158 aaatatatagtctgtgtgaccacattttttcagttgcgtgaccactatt 33815110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 11108125 - 11108160
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttt 127  Q
    ||||| ||||||||||||||||||||||||||||||    
T  11108125 attaaccaaatatatggtctgtgtgaccacattttt 11108160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 3222397 - 3222446
Alignment:
Q  98 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||| | ||||||||||||||||| |||| ||||| ||||||    
T  3222397 caaatatatggtgtctgtgaccacattttttcagttgcgtgaccactatt 3222446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 11108225 - 11108177
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgac 140  Q
    ||||| |||||||||| | ||||||||||||||||||| |||| |||||    
T  11108225 attaaccaaatatatgatttgtgtgaccacattttttcagttgcgtgac 11108177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 23595295 - 23595259
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacatttttt 128  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  23595295 attaaccaaatatatagtctgtgtgaccacatttttt 23595259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 38244849 - 38244801
Alignment:
Q  98 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactat 146  Q
    |||||||||||||||||||||||||||||||| |||| ||||| |||||    
T  38244849 caaatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 38244801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 2995962 - 2996007
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtg 138  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  2995962 attaatcaaatatatggt-tgtgtgaccacattttttcagttgtgtg 2996007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 5855072 - 5855114
Alignment:
Q  98 caaatatatggtctgtgtgaccacattttttcggttgtgtgac 140  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  5855072 caaatatatggtctgtgtgaccacatattttcagttgtgtgac 5855114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 9929919 - 9929871
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||||||||||||||||||||  ||| ||||| ||||||    
T  9929919 aaatatatggtctgtgtgaccacattttttcatttgcgtgaccactatt 9929871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 17227499 - 17227551
Alignment:
Q  98 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactattctt 150  Q
    |||||||||||||||||||||||||||||||  | || ||||| |||||||||    
T  17227499 caaatatatggtctgtgtgaccacattttttaaggtgcgtgaccactattctt 17227551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 34490335 - 34490289
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaacta 145  Q
    ||||||||||||||||||||||||||||||  |||| ||||| ||||    
T  34490335 aaatatatggtctgtgtgaccacatttttttagttgcgtgaccacta 34490289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 42604371 - 42604325
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtga 139  Q
    ||||||||||||||||| |||||||||||||| |||  |||||||||    
T  42604371 ttaatcaaatatatggtttgtgtgaccacattgttttagttgtgtga 42604325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 5831686 - 5831633
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaacta 145  Q
    ||||| ||||||||||||||||||||||| |||||||  |||| ||||| ||||    
T  5831686 attaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccacta 5831633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 128
Target Start/End: Original strand, 24708074 - 24708103
Alignment:
Q  99 aaatatatggtctgtgtgaccacatttttt 128  Q
    ||||||||||||||||||||||||||||||    
T  24708074 aaatatatggtctgtgtgaccacatttttt 24708103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 5831720 - 5831672
Alignment:
Q  45 tgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    ||||||| |||||||||||||||  |||||| ||||||| |||||||||    
T  5831720 tgtacacccctttgtatcactctgaaaaatttcaattaaccaaatatat 5831672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 25238629 - 25238577
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaacta 145  Q
    ||||||||||||||||| | ||||||||||||||||  ||| |||||| ||||    
T  25238629 ttaatcaaatatatggtttctgtgaccacatttttttagttatgtgactacta 25238577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 34490156 - 34490203
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||||||||||||| ||||||||||| ||||| |||| ||||||    
T  34490156 aaatatatggtctgtgtga-cacattttttcagttgtatgaccactatt 34490203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 22740117 - 22740152
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacatttttt 128  Q
    ||||||||||||||||||||||||||||||||||||    
T  22740117 ttaatcaaatatatggtctgtgtgaccacatttttt 22740152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 15958269 - 15958323
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||| ||||||||||||| |||||||||||||||||  |||||||||| ||||||    
T  15958269 ttaaccaaatatatggtcagtgtgaccacatttttttagttgtgtgaccactatt 15958323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 20556727 - 20556781
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||| ||||||||||||| ||||||||| |||||||| |||||||||| ||||||    
T  20556727 ttaaccaaatatatggtcggtgtgaccatattttttcagttgtgtgaccactatt 20556781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 5083749 - 5083784
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacatttttt 128  Q
    ||||||||||||||||||| ||||||||||||||||    
T  5083749 ttaatcaaatatatggtctttgtgaccacatttttt 5083784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 5083936 - 5083885
Alignment:
Q  96 atcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||| |||||||||||||||||||  ||| ||||| ||||||    
T  5083936 atcaaatatatggtatgtgtgaccacattttttcaattgcgtgaccactatt 5083885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 18312726 - 18312801
Alignment:
Q  18 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    ||||||||| ||| ||||| ||||   |||| || |||||||| |||||| ||||||| |||||||||||||||||    
T  18312726 aataaagattggtagacacccttaacgtgtatacccctttgtaccactctcgaaaatttcaattaatcaaatatat 18312801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 18312787 - 18312842
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||||||||| ||||||||||| ||||| |||| || || ||||||    
T  18312787 attaatcaaatatatggtctctgtgaccacatattttcagttgcgtcactactatt 18312842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 22033213 - 22033154
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactattcttca 152  Q
    |||| ||||||||||||||||||||||| |||||||  |||| ||||| |||||| ||||    
T  22033213 ttaaccaaatatatggtctgtgtgaccatattttttgagttgcgtgaccactatttttca 22033154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 27523441 - 27523496
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||||| ||||||||| ||||||||||  ||||||| || ||||||    
T  27523441 attaatcaaatatatgatctgtgtgatcacatttttttagttgtgtaactactatt 27523496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 128
Target Start/End: Complemental strand, 21589771 - 21589741
Alignment:
Q  98 caaatatatggtctgtgtgaccacatttttt 128  Q
    |||||||||||||||||||||||||||||||    
T  21589771 caaatatatggtctgtgtgaccacatttttt 21589741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 28805171 - 28805125
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtga 139  Q
    |||| |||||||||||| ||||||||||||||||||| |||| ||||    
T  28805171 ttaaccaaatatatggtatgtgtgaccacattttttcagttgcgtga 28805125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 28804887 - 28804956
Alignment:
Q  24 gataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    ||||||| ||||| |||| ||||||||| | |||||| || ||||||||||| || |||| |||||||||    
T  28804887 gataggtagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatat 28804956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 15958456 - 15958428
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttt 127  Q
    |||||||||||||||||||||||||||||    
T  15958456 aaatatatggtctgtgtgaccacattttt 15958428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 20556916 - 20556868
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||| |||||| |||||||||||||| ||||| ||||| ||||||    
T  20556916 aaatatatagtctgtttgaccacatttttttggttgagtgaccactatt 20556868  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 21589586 - 21589630
Alignment:
Q  95 aatcaaatatatggtctgtgtgaccacattttttcggttgtgtga 139  Q
    |||||||||||| |||| |||||||| |||||||| |||||||||    
T  21589586 aatcaaatatattgtctatgtgaccatattttttcagttgtgtga 21589630  T

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Target: scaffold0126 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 21621 - 21575
Alignment:
Q  100 aatatatggtctgtgtgaccacattttttcggttgtgtgacaactat 146  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||    
T  21621 aatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 21575  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 31596756 - 31596810
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||||||||||| ||||||||||||||||||| |||| || || ||||||    
T  31596756 ttaatcaaatatatggtatgtgtgaccacattttttcagttgcgttaccactatt 31596810  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 40502437 - 40502388
Alignment:
Q  98 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||||||||||||||||||||  | |||||||| ||||||    
T  40502437 caaatatatggtctgtgtgaccacattttttaaggtgtgtgaccactatt 40502388  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 5322145 - 5322097
Alignment:
Q  45 tgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    |||||||||||||||||||||||  |||||| ||||||| |||||||||    
T  5322145 tgtacactcctttgtatcactctcaaaaatttcaattaaccaaatatat 5322097  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 15714837 - 15714789
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||||||||||| ||||||||||||| | |||||||| ||||||    
T  15714837 aaatatatggtctgtgtaaccacattttttcagctgtgtgactactatt 15714789  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 31596694 - 31596769
Alignment:
Q  18 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    ||||||||| ||| |||||||||| |||||||||  ||||||| |||| |  |||||| || ||||||||||||||    
T  31596694 aataaagattggtagacactcttaatatgtacacctctttgtaccactttgaaaaattacagttaatcaaatatat 31596769  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 6809949 - 6809895
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||| || |||||||||||||||||   ||||||||| |||||||    
T  6809949 ttaatcaaatatatagtatgtgtgaccacatttttatagttgtgtgataactatt 6809895  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 128
Target Start/End: Complemental strand, 40502225 - 40502195
Alignment:
Q  98 caaatatatggtctgtgtgaccacatttttt 128  Q
    |||||||||||||||||||||||||||||||    
T  40502225 caaatatatggtctgtgtgaccacatttttt 40502195  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 5322111 - 5322074
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttc 129  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  5322111 attaaccaaatatatggtctgtgtgatcacattttttc 5322074  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 33286177 - 33286214
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttc 129  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  33286177 attaaccaaatatatggtctgcgtgaccacattttttc 33286214  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 31273711 - 31273663
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgac 140  Q
    |||||||||||||||||||| |||| |||||| ||||| |||| |||||    
T  31273711 attaatcaaatatatggtctatgtggccacatgttttcagttgcgtgac 31273663  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 31273777 - 31273697
Alignment:
Q  13 aatataataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    |||| ||||||||| ||| || ||||||| | |||| ||   |||||| |||||| ||||||| |||||||||||||||||    
T  31273777 aatagaataaagattggtagatactcttaatgtgtatacctttttgtaccactctcgaaaatttcaattaatcaaatatat 31273697  T

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Target: scaffold0213 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 24981 - 24932
Alignment:
Q  98 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| ||||||    
T  24981 caaatatatagtctgtgtgaccacatgttttcagttgtgtgaccactatt 24932  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 15221711 - 15221663
Alignment:
Q  99 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||||||||||||||||||||||||   ||||||||| ||||||    
T  15221711 aaatatatggtctgtgtgaccacatttttttaattgtgtgaccactatt 15221663  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 35922606 - 35922682
Alignment:
Q  17 taataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    |||||||||| ||| ||||| |||| | ||||||  |||||||||||||||  |||||| || ||||||||||||||    
T  35922606 taataaagatcggtagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatat 35922682  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 43461915 - 43461835
Alignment:
Q  13 aatataataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 93  Q
    |||| ||||||||||||| |||||||||| | |||  || |||||||| |||| | ||||||| || ||||||||||||||    
T  43461915 aatagaataaagataggtagacactcttaatgtgtgtacccctttgtagcacttttgaaaatttcagttaatcaaatatat 43461835  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 35922669 - 35922704
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacatttttt 128  Q
    ||||||||||||||||| ||||||||||||||||||    
T  35922669 ttaatcaaatatatggtatgtgtgaccacatttttt 35922704  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 36169478 - 36169427
Alignment:
Q  96 atcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||||||| |||||||||||||| |||| |||| ||||| ||||||    
T  36169478 atcaaatatatggtatgtgtgaccacattctttcagttgcgtgaccactatt 36169427  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 7156226 - 7156180
Alignment:
Q  101 atatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||||||||| |||||||||||||||||  |||||||||| ||||||    
T  7156226 atatatggtccgtgtgaccacatttttttagttgtgtgaccactatt 7156180  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 43262848 - 43262794
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||| |||||||||||||||||||||||||||| ||  ||| |||||| ||||||    
T  43262848 ttaaccaaatatatggtctgtgtgaccacatttgtttagttatgtgactactatt 43262794  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 43461848 - 43461795
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    ||||||||||||||||||| || ||||| |||||||| |||||||||| ||||||    
T  43461848 ttaatcaaatatatggtctttg-gaccatattttttcagttgtgtgaccactatt 43461795  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 38522116 - 38522079
Alignment:
Q  92 attaatcaaatatatggtctgtgtgaccacattttttc 129  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  38522116 attaaccaaatatatggtctatgtgaccacattttttc 38522079  T

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Target: scaffold1126 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 357 - 303
Alignment:
Q  93 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 147  Q
    |||| ||||||||||||||||||| ||||| |||||| |||| ||||| ||||||    
T  357 ttaaccaaatatatggtctgtgtggccacactttttcagttgcgtgaccactatt 303  T

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