View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_84 (Length: 245)
Name: NF1783_low_84
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_84 |
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| [»] scaffold0121 (2 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 28566 - 28488
Alignment:
| Q |
7 |
agtgagatgaatgaaacaatataaaagtgaaacacattatcatcaactagatttgatatcctaacttaacaaccctata |
85 |
Q |
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| T |
28566 |
agtgaaatgaatgaaacaatataaaagtgaaacacattatcatcaactagatttgatatcccagcttaacaaccctata |
28488 |
T |
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Target: scaffold0121; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 28426 - 28344
Alignment:
| Q |
144 |
ctaagtctaagaacttgttcaccactttccttcacattctcgccattcaaacaagcnnnnnnnctctccacatcattcaaacc |
226 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
28426 |
ctaagtctaagaacttgttcaccactttccctcacattctcaccattcaaacaagcaaaaaaactctccacatcattcaaacc |
28344 |
T |
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