View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_87 (Length: 240)
Name: NF1783_low_87
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33751773 - 33751995
Alignment:
| Q |
1 |
tttaggatacttgcagcagtacaaggaaaacagaagcggaaataccttgtgcagaaaaaactgagcaacaagacaattcttctgattcaatggatagtaa |
100 |
Q |
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| T |
33751773 |
tttaggatacttgcagcagtacaaggaaaacagaagcggaaataccttgtgcagaaaaaactgagcaacaagacaattcttctgattcaatggatagtaa |
33751872 |
T |
|
| Q |
101 |
acaagagtctatacaggaaaaggagccaatagtaaattccaagcccactgaagataacacggagactacagatcaagataaactcttaaagaaaccagac |
200 |
Q |
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| T |
33751873 |
acaagagtctatacaggaaaaggagccaatagtaaattccaagcccactgaagataacacggagactacagatcaagataaactcttaaagaaaccagac |
33751972 |
T |
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| Q |
201 |
aagattgttcagtgtccgcgatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
33751973 |
aagattgttcagtgtccgcgatg |
33751995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 9431481 - 9431432
Alignment:
| Q |
168 |
acagatcaagataaactcttaaagaaaccagacaagattgttcagtgtcc |
217 |
Q |
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| T |
9431481 |
acagatcaagacaaagtcctaaagaaaccagacaagattgttcaatgtcc |
9431432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 9424150 - 9424101
Alignment:
| Q |
168 |
acagatcaagataaactcttaaagaaaccagacaagattgttcagtgtcc |
217 |
Q |
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| T |
9424150 |
acagatcaagacaaagtcttaaagaaacccgacaaaattgttcaatgtcc |
9424101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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