View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_88 (Length: 239)
Name: NF1783_low_88
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 42743970 - 42744203
Alignment:
| Q |
1 |
tttcataaatgttcctctgtgacacatattcttttttacagggactgtgagactactatactaattaacaaatgaaaatcatgtgattagccttatttga |
100 |
Q |
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| T |
42743970 |
tttcataaatgttcctctgtgacacatatttttttttacagggactgtgacactactatactaattaacaaatgaaaatcatgtgattagccttatttga |
42744069 |
T |
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| Q |
101 |
tttccaacagtatacaaaggcattattaaatttagtggtaattatgagtccaaccactagactacttggccaatagcnnnnnnnnnnnnntagtggtaat |
200 |
Q |
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| T |
42744070 |
tttccaacagtatacaaaggcattattaaatttagtggtaattatgagtccaaccactagactacttgaccaatagcaaaaaaaaaa----agtggtaat |
42744165 |
T |
|
| Q |
201 |
taagagcattagtcctactcctacatctgagtttctgt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
42744166 |
taagagcattagtcctactcctacatctgagtttctgt |
42744203 |
T |
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