View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_89 (Length: 238)
Name: NF1783_low_89
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 38 - 231
Target Start/End: Original strand, 16207354 - 16207551
Alignment:
| Q |
38 |
aaaagtttaacacaattgtccatgaaatgacaacttaatgctaagagtttgatattctaactt--agaattgaagttgaaattctct--tagggagaggt |
133 |
Q |
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| T |
16207354 |
aaaagttcaacataattgtccatgaaatgacaacttaatgctaagagtttgattttctaactctaagaattgaagttgaaattctctcttggggggaggt |
16207453 |
T |
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| Q |
134 |
gtagaatgaccttaatgacactttaattagtaataatttcattcttctcaaatttctcttttcataaagttgagcacactacttgtattaggcctatg |
231 |
Q |
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| T |
16207454 |
gtagaatgaccttaatgacacattaattagtaataatttcattcttctccaatttctcttttcataaagttgagcacactacttgtgttaggcctatg |
16207551 |
T |
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