View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_low_9 (Length: 595)

Name: NF1783_low_9
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_low_9
NF1783_low_9
[»] scaffold0095 (2 HSPs)
scaffold0095 (147-409)||(27217-27486)
scaffold0095 (426-579)||(27035-27188)
[»] chr8 (4 HSPs)
chr8 (147-409)||(39403259-39403528)
chr8 (426-579)||(39403077-39403230)
chr8 (13-50)||(38362413-38362450)
chr8 (17-45)||(4622931-4622959)
[»] chr5 (4 HSPs)
chr5 (17-50)||(27020257-27020290)
chr5 (17-50)||(37270238-37270271)
chr5 (17-49)||(9591605-9591637)
chr5 (17-49)||(42612432-42612464)
[»] chr4 (6 HSPs)
chr4 (17-50)||(4652785-4652818)
chr4 (17-49)||(41041641-41041673)
chr4 (17-56)||(23419505-23419544)
chr4 (11-49)||(16664482-16664520)
chr4 (17-49)||(13534762-13534794)
chr4 (17-49)||(20354273-20354305)
[»] chr3 (3 HSPs)
chr3 (17-49)||(30043672-30043704)
chr3 (17-51)||(37220287-37220321)
chr3 (17-45)||(40905999-40906027)
[»] chr1 (3 HSPs)
chr1 (17-47)||(7152718-7152748)
chr1 (17-49)||(21096641-21096673)
chr1 (17-49)||(44512569-44512601)
[»] chr7 (5 HSPs)
chr7 (17-50)||(725673-725706)
chr7 (17-50)||(44459443-44459476)
chr7 (17-49)||(5374623-5374655)
chr7 (17-49)||(9663738-9663770)
chr7 (17-49)||(33246788-33246820)
[»] chr6 (3 HSPs)
chr6 (17-49)||(11837827-11837859)
chr6 (17-49)||(14103784-14103816)
chr6 (17-49)||(23580078-23580110)
[»] chr2 (4 HSPs)
chr2 (17-49)||(3907086-3907118)
chr2 (17-49)||(14006231-14006263)
chr2 (11-47)||(28391977-28392013)
chr2 (17-49)||(37726099-37726131)


Alignment Details
Target: scaffold0095 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 147 - 409
Target Start/End: Complemental strand, 27486 - 27217
Alignment:
Q  147 aattcaaaggccaaagaagattcaactcaagttgctcattcaaa-------cttgaaaccttactcattcttcttctccacaagacaaagaccccaattt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27486 aattcaaaggccaaagaagattcaactcaagttgctcattcaaagttgaaacttgaaaccttactcattcttcttctccacaagacaaagaccccaattt 27387  T
Q  240 aagaaacaaaattagaaaattaaaaccatttttatttttcattccatgactgcaaacgaaacttcaccgtaagtactcactattttcatttccactcacc 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||     
T  27386 aagaaacaaaattagaaaattaaaaccatttttatttttcattccatggctgcaaacgaaacttcaccgtaagtactcactcttttcatttccactcact 27287  T
Q  340 aactaattttcaaacaaaatatcatagaataatcaaaacctcaatttccacgaaaactctaaggttgttg 409  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  27286 aactaattttcaaacaaaacataatagaataatcaaaacctcaatttccacgaaaactctaaggttgttg 27217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 426 - 579
Target Start/End: Complemental strand, 27188 - 27035
Alignment:
Q  426 tgttgtttgttctcgtgtcaggtttgagagcagtgagatgctggcaacgtttttgatttctacaccactgttatcggagtcatggaggatgtgcagtcag 525  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||  |||||||||||||| |||| ||  ||    
T  27188 tgttgttttttcacgtgtcaggtttgagagcagtgagatgctggccaggttcttgatttctacgccactgttgccggagtcatggaggttgtgtagcaag 27089  T
Q  526 gccaacgcctccgctgtcaacctccgcagttttgtggtggagcgtgttggcaac 579  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27088 gtcaacgcctccgctgtcaacttccgcagttttgtggtggagcgtgttggcaac 27035  T

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Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 147 - 409
Target Start/End: Complemental strand, 39403528 - 39403259
Alignment:
Q  147 aattcaaaggccaaagaagattcaactcaagttgctcattcaaa-------cttgaaaccttactcattcttcttctccacaagacaaagaccccaattt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39403528 aattcaaaggccaaagaagattcaactcaagttgctcattcaaagttgaaacttgaaaccttactcattcttcttctccacaagacaaagaccccaattt 39403429  T
Q  240 aagaaacaaaattagaaaattaaaaccatttttatttttcattccatgactgcaaacgaaacttcaccgtaagtactcactattttcatttccactcacc 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||     
T  39403428 aagaaacaaaattagaaaattaaaaccatttttatttttcattccatggctgcaaacgaaacttcaccgtaagtactcactcttttcatttccactcact 39403329  T
Q  340 aactaattttcaaacaaaatatcatagaataatcaaaacctcaatttccacgaaaactctaaggttgttg 409  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  39403328 aactaattttcaaacaaaacataatagaataatcaaaacctcaatttccacgaaaactctaaggttgttg 39403259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 426 - 579
Target Start/End: Complemental strand, 39403230 - 39403077
Alignment:
Q  426 tgttgtttgttctcgtgtcaggtttgagagcagtgagatgctggcaacgtttttgatttctacaccactgttatcggagtcatggaggatgtgcagtcag 525  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||  |||||||||||||| |||| ||  ||    
T  39403230 tgttgttttttcacgtgtcaggtttgagagcagtgagatgctggccaggttcttgatttctacgccactgttgccggagtcatggaggttgtgtagcaag 39403131  T
Q  526 gccaacgcctccgctgtcaacctccgcagttttgtggtggagcgtgttggcaac 579  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39403130 gtcaacgcctccgctgtcaacttccgcagttttgtggtggagcgtgttggcaac 39403077  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 38362450 - 38362413
Alignment:
Q  13 tattctctaaacaagagagggtaatgtaggcctcacct 50  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  38362450 tattctctaaacaagagagggtaatctagacctcacct 38362413  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 4622931 - 4622959
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcct 45  Q
    |||||||||||||||||||||||||||||    
T  4622931 ctctaaacaagagagggtaatgtaggcct 4622959  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 27020257 - 27020290
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacct 50  Q
    ||||||||||||||||||||||||||||||||||    
T  27020257 ctctaaacaagagagggtaatgtaggcctcacct 27020290  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 37270271 - 37270238
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacct 50  Q
    |||||||||||||||||||| |||||||||||||    
T  37270271 ctctaaacaagagagggtaacgtaggcctcacct 37270238  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 9591637 - 9591605
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    ||||||||||||||||||||||||| |||||||    
T  9591637 ctctaaacaagagagggtaatgtagacctcacc 9591605  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 42612432 - 42612464
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||| ||||||||||||    
T  42612432 ctctaaacaagagagggtaacgtaggcctcacc 42612464  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 4652818 - 4652785
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacct 50  Q
    ||||||||||||||||||||||||||||||||||    
T  4652818 ctctaaacaagagagggtaatgtaggcctcacct 4652785  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 41041641 - 41041673
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||||||||||||||||    
T  41041641 ctctaaacaagagagggtaatgtaggcctcacc 41041673  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 23419505 - 23419544
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacctgaaatt 56  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  23419505 ctctaaacaagagagggtaacgtaggcctcacctaaaatt 23419544  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 16664520 - 16664482
Alignment:
Q  11 attattctctaaacaagagagggtaatgtaggcctcacc 49  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  16664520 attatcctctaaacaagagagggtaacgtaggcctcacc 16664482  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 13534762 - 13534794
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  13534762 ctctaaacaagagagggtaatataggcctcacc 13534794  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 20354273 - 20354305
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||| ||||||||||||    
T  20354273 ctctaaacaagagagggtaacgtaggcctcacc 20354305  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 30043672 - 30043704
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||||||||||||||||    
T  30043672 ctctaaacaagagagggtaatgtaggcctcacc 30043704  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 37220287 - 37220321
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacctg 51  Q
    |||||||||||||||||||| ||||||||||||||    
T  37220287 ctctaaacaagagagggtaacgtaggcctcacctg 37220321  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 40906027 - 40905999
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcct 45  Q
    |||||||||||||||||||||||||||||    
T  40906027 ctctaaacaagagagggtaatgtaggcct 40905999  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 7152748 - 7152718
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctca 47  Q
    |||||||||||||||||||||||||||||||    
T  7152748 ctctaaacaagagagggtaatgtaggcctca 7152718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 21096673 - 21096641
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||| ||||||||||||    
T  21096673 ctctaaacaagagagggtaacgtaggcctcacc 21096641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 44512569 - 44512601
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  44512569 ctctaaacaagagagagtaatgtaggcctcacc 44512601  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 725673 - 725706
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacct 50  Q
    |||||||||||||||||||| |||||||||||||    
T  725673 ctctaaacaagagagggtaacgtaggcctcacct 725706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 44459443 - 44459476
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacct 50  Q
    |||||||||||||||||||| |||||||||||||    
T  44459443 ctctaaacaagagagggtaacgtaggcctcacct 44459476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 5374623 - 5374655
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||| ||||||||||||    
T  5374623 ctctaaacaagagagggtaacgtaggcctcacc 5374655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 9663738 - 9663770
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  9663738 ctctaaacaagagagggtaatataggcctcacc 9663770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 33246788 - 33246820
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||||||| ||||||||    
T  33246788 ctctaaacaagagagggtaatgtaagcctcacc 33246820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 11837827 - 11837859
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||| ||||||||||||    
T  11837827 ctctaaacaagagagggtaacgtaggcctcacc 11837859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 14103816 - 14103784
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||| ||||||||||||    
T  14103816 ctctaaacaagagagggtaacgtaggcctcacc 14103784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 23580110 - 23580078
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||| ||||||||||||    
T  23580110 ctctaaacaagagagggtaaggtaggcctcacc 23580078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 3907086 - 3907118
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  3907086 ctctaaacaagagagtgtaatgtaggcctcacc 3907118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 14006231 - 14006263
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  14006231 ctcttaacaagagagggtaatgtaggcctcacc 14006263  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 28391977 - 28392013
Alignment:
Q  11 attattctctaaacaagagagggtaatgtaggcctca 47  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  28391977 attatcctctaaacaagagagggtaacgtaggcctca 28392013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 37726099 - 37726131
Alignment:
Q  17 ctctaaacaagagagggtaatgtaggcctcacc 49  Q
    |||||||||||||||||||| ||||||||||||    
T  37726099 ctctaaacaagagagggtaacgtaggcctcacc 37726131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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