View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_96 (Length: 236)
Name: NF1783_low_96
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3417071 - 3416846
Alignment:
| Q |
1 |
gtttggaacgacataggaacttgaatc------agaatccgtaaaaagtaaattatttgttctaagcgattccatgagcaagactggaaagacagacaaa |
94 |
Q |
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| T |
3417071 |
gtttggaacgatataggaacttgaatccgaatcagaatccgtaaaaagtaaattatttgttctaagggattccatgagcaagactggaaaaacggacaaa |
3416972 |
T |
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| Q |
95 |
acattgtatgtgaaattagggatttgaaggctctgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaa |
194 |
Q |
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| T |
3416971 |
acattgtatgtgaaattagggatttgaagcttctgggccaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaa |
3416872 |
T |
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| Q |
195 |
tgaaatcctcaatgggtcgatggagg |
220 |
Q |
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| T |
3416871 |
tgaaatcctcaatgggtcgatggagg |
3416846 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 13440983 - 13441069
Alignment:
| Q |
134 |
aagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggagg |
220 |
Q |
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| T |
13440983 |
aagtcattagcccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggagg |
13441069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 13455611 - 13455669
Alignment:
| Q |
128 |
tgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatc |
186 |
Q |
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| T |
13455611 |
tgggccaagtcattaacccatgggtatgcagcgtcggagatgatacaatctgggggatc |
13455669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 13449146 - 13449219
Alignment:
| Q |
134 |
aagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaat |
207 |
Q |
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| T |
13449146 |
aagtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaat |
13449219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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