View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_low_98 (Length: 235)
Name: NF1783_low_98
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_low_98 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9151950 - 9151731
Alignment:
| Q |
1 |
tcaaagtactttacattttcaacaaatttatctttaaaaagcactgtctttaaattcaattactttcttcgcattttatctttcaagtcaattttacttc |
100 |
Q |
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| T |
9151950 |
tcaaagtactttacattttcaacaaatttatctttacaaagcactgtctttaaattcaattactttcttcgcattttatctttcaagtcaattttacttc |
9151851 |
T |
|
| Q |
101 |
agcgaaaaagacaggaaatattagaagcttctttttcttccctaaaaagaaaaagctgaacctcgaccaaaatttattttttcatgattgagaaaaagag |
200 |
Q |
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| T |
9151850 |
agcgaaaaagacaggaaatattagaagcttctttttcttccctaaaaagaaaaagctgaacctcaaccaaaatttattttttcatgattgagaaaaagag |
9151751 |
T |
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| Q |
201 |
acaacaaacacagatcttat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
9151750 |
acaacaaacacagatcttat |
9151731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 9176678 - 9176787
Alignment:
| Q |
111 |
acaggaaatattagaagcttctttttcttccctaaaaagaaaaagctgaacctcgaccaaaatttattttttcatgattgagaaaaagagacaacaaaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9176678 |
acaggaaatattagaagcttctttttcttccctaaaaagaaaaagctgaacctcaatcaaaatttattttttcatgattgagaaaaagagacaacaaaca |
9176777 |
T |
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| Q |
211 |
cagatcttat |
220 |
Q |
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|||||||||| |
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| T |
9176778 |
cagatcttat |
9176787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 9176624 - 9176672
Alignment:
| Q |
7 |
tactttacattttcaacaaatttatctttaaaaagcactgtctttaaat |
55 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9176624 |
tactttacattttcaacaaatttatctttacaaagcactgtctttaaat |
9176672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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