View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17840_low_1 (Length: 675)

Name: NF17840_low_1
Description: NF17840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17840_low_1
NF17840_low_1
[»] chr8 (6 HSPs)
chr8 (284-481)||(41634146-41634349)
chr8 (547-653)||(41634418-41634524)
chr8 (1-62)||(41634015-41634076)
chr8 (94-150)||(41634083-41634139)
chr8 (1-51)||(42808869-42808920)
chr8 (20-62)||(33360559-33360602)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-62)||(39794-39856)
[»] chr4 (1 HSPs)
chr4 (1-62)||(14799871-14799933)
[»] chr5 (1 HSPs)
chr5 (1-62)||(22273054-22273116)
[»] chr3 (1 HSPs)
chr3 (1-62)||(2733920-2733982)
[»] chr6 (1 HSPs)
chr6 (1-62)||(7171174-7171236)
[»] chr1 (1 HSPs)
chr1 (1-62)||(17480847-17480905)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 1e-92; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 284 - 481
Target Start/End: Original strand, 41634146 - 41634349
Alignment:
Q  284 tctctgtttttgaattgcaaga------ggaaggggaacaaatatatcaattctcagttacaaatttaataaacttcaaaaactcaggattttcaatcaa 377  Q
    ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41634146 tctctgtttttgaattgcaagagaaagaggaaggggaacaaatatatcaattctcagttacaaatttaataaacttcaaaaactcagaattttcaatcaa 41634245  T
Q  378 aaccaaaatcccgtcattacagagctcagaggatgaacaaaatataataattaacgaaagaaaattgaaataaaatgataattgacttgcttgcaggtta 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41634246 aaccaaaatcccgtcattacagagctcagaggatgaacaaaatataataattaacgaaagaaaattgaaataaaatgataattgacttgcttgcagatta 41634345  T
Q  478 tgag 481  Q
    ||||    
T  41634346 tgag 41634349  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 547 - 653
Target Start/End: Original strand, 41634418 - 41634524
Alignment:
Q  547 ggagaattacctacctattgtttcgattcgatttggaaattgatttgaattatgattatgagtagcggcggttaattagggctttggaatcggaaaaggg 646  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41634418 ggagaattacctacctattgtttcgattcgatttggaaattgatttgaattatgattatgagtagcggcggttaattagggttttggaatcggaaaaggg 41634517  T
Q  647 attgtgt 653  Q
    |||||||    
T  41634518 attgtgt 41634524  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 41634015 - 41634076
Alignment:
Q  1 atatagaacaggttatcacaactaacagttaacttaaataaatcaacaaaaaactatacttt 62  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41634015 atatagaacaagttatcacaactaacagttaacttaaataaatcaacaaaaaactatacttt 41634076  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 41634083 - 41634139
Alignment:
Q  94 agggaaatagtagagaaaaacattgactagaatattacagagaattataaaacacgg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41634083 agggaaatagtagagaaaaacattgactagaatattacagagaattataaaacacgg 41634139  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42808920 - 42808869
Alignment:
Q  1 atatagaacaggttatcacaactaacagttaacttaaataa-atcaacaaaa 51  Q
    |||||||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  42808920 atatagaacaagttatcacaactaacaattaacttaaataacatcaacaaaa 42808869  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 33360602 - 33360559
Alignment:
Q  20 aactaacagttaacttaaataa-atcaacaaaaaactatacttt 62  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  33360602 aactaacagttaacttaaataacatcaacaaaaagctatacttt 33360559  T

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Target: scaffold0005 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39856 - 39794
Alignment:
Q  1 atatagaacaggttatcacaactaacagttaacttaaataa-atcaacaaaaaactatacttt 62  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  39856 atatagaacaagttatcacaactaacagttaacttaaataacatcaacaaaaatctatacttt 39794  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14799871 - 14799933
Alignment:
Q  1 atatagaacaggttatcacaactaacagttaacttaaataa-atcaacaaaaaactatacttt 62  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  14799871 atatagaacaagttatcacaactaacagttaacttaaataacatcaacaaaaatctatacttt 14799933  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22273054 - 22273116
Alignment:
Q  1 atatagaacaggttatcacaactaacagttaacttaaataa-atcaacaaaaaactatacttt 62  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  22273054 atatagaacaagttatcacaactaacagataacttaaataacatcaacaaaaagctatacttt 22273116  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2733982 - 2733920
Alignment:
Q  1 atatagaacaggttatcacaactaacagttaacttaaat-aaatcaacaaaaaactatacttt 62  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  2733982 atatagaacaagttatcacaactaacagataacttaaataaaatcaacaaaaagctatacttt 2733920  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7171236 - 7171174
Alignment:
Q  1 atatagaacaggttatcacaactaacagttaacttaaat-aaatcaacaaaaaactatacttt 62  Q
    ||||| |||| ||||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  7171236 atataaaacaagttatcacaactaacagataacttaaataaaatcaacaaaaagctatacttt 7171174  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17480847 - 17480905
Alignment:
Q  1 atatagaacaggttatcacaactaacagttaacttaaataa-atcaacaaaaaactatacttt 62  Q
    |||||||||| ||||||||||||||||||    |||||||| ||||||||||| |||||||||    
T  17480847 atatagaacaagttatcacaactaacagt----ttaaataacatcaacaaaaagctatacttt 17480905  T

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