View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17840_low_2 (Length: 452)
Name: NF17840_low_2
Description: NF17840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17840_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 25467183 - 25466956
Alignment:
| Q |
1 |
cttcttcccgcgcttcttacttccatctcgacctcaccgataaacaccgcatcgccaaaggtaacctttcaatcgacgcgatcttctttcgatcttcttt |
100 |
Q |
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| T |
25467183 |
cttcttcccgcgcttcttacttccatctcgacctcaccgataaacaccgcatcgccaaaggtaaccgttcaatcgacgcgatcttctttcgatcttcttt |
25467084 |
T |
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| Q |
101 |
caattttctaacaatgtcgttttgtgcagttctagaaggttcttccgtcgttttctattttgatgttgatagttccaataatggcgacgatttctgcagt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25467083 |
caattttctaacaatgtctttttgtgcagttctagaaggttcttccgtcgttttctattttgatgttgatagttccaataatggcgaccatttctgcagt |
25466984 |
T |
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| Q |
201 |
ttgtataagctaatagttcaaggtactc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25466983 |
ttgtataagctaatagttcaaggtactc |
25466956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 297 - 445
Target Start/End: Complemental strand, 25466887 - 25466739
Alignment:
| Q |
297 |
ggtgcgaagaatgtgattattgcttgcagagaatctaaagtgaaacgcttaatatacaatagttctgctgatgttgtgtttgatagagataaaccgttgg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25466887 |
ggtgcgaagaatgtgattattgcttgcagagaatctaaagtgaaacgcttaatatacaatagttctgctgatgttgtgtttgatagagataaaccgttgg |
25466788 |
T |
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| Q |
397 |
cgtatccgtggaaagtgagattttctttaagtttgtttcctttgcttct |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25466787 |
cgtatccgtggaaagtgagattttctttaagtttgtttcctttgtttct |
25466739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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